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👍 👎 😄 🎉 😕 ❤️ 🚀 👀
adding a SamRecordFilter that inverts the decision of a provided filt…
#1519 opened Nov 25, 2020 by yfarjoun 0 of 5
Add a getIDs method to VariantContext
#1508 opened Sep 2, 2020 by lbergelson • Approved
1
@lbergelson
12
WIP: support very large sequence dictionaries/headers
#1501 opened Aug 21, 2020 by nh13 • Draft
12
Extend SamLocusAndReferenceIterator to work with CRAMFileReader
#1483 opened May 31, 2020 by jkaczynski1
4
Switch to Java 11, Add GA4GH Crypt4H SeekableStream [WIP]
#1476 opened May 3, 2020 by AlexanderSenf
1
Extract Allele into a interface with only one implementation as is currently the case.
Waiting for revisions dev
#1454 opened Jan 25, 2020 by vruano • Changes requested
@vruano
19
Some improvements on CigarOperator enum.
cleanup
#1448 opened Jan 1, 2020 by vruano • Changes requested 0 of 5
@lbergelson
22
Proposal: handling UCSC 2bit sequences as ReferenceFile
Waiting for revisions
#1417 opened Aug 31, 2019 by lindenb
7
Allow partially spanned alleles.
Waiting for revisions
#1413 opened Aug 26, 2019 by tfenne
@tfenne
11
Addresses part of issue #18, Allele class refactoring.
Large 🐋 Waiting for Review
#1370 opened May 18, 2019 by vruano 3 of 5
@lbergelson
4
Add support for the TP (topology) tag in the sequence dictionary
Waiting for revisions
#1363 opened May 2, 2019 by nh13 • Changes requested
@yfarjoun
16
Adding tests revealing 0-length interval nonsense
#1320 opened Mar 8, 2019 by lbergelson • Draft
4
Async BAM performance improvements
Large 🐋 Waiting for revisions
#1249 opened Jan 2, 2019 by d-cameron • Changes requested
@lbergelson
55
Disallow tabix indices for non-BGZIP inputs
Waiting for revisions
#1101 opened Mar 20, 2018 by lbergelson
@lbergelson
12
ParallelBlockCompressedOutputStream
Large 🐋 Waiting for Review
#922 opened Jun 29, 2017 by SilinPavel
1
New AsyncWriteSortingCollection
Large 🐋 Waiting for Review
#909 opened Jun 23, 2017 by SilinPavel
4
Updating format of doubles in VCFs.
Waiting for revisions
#876 opened May 21, 2017 by nh13 • Changes requested
18
Tribble writing support
Large 🐋
#822 opened Mar 10, 2017 by magicDGS 4 of 5
@jonn-smith
25
Added validation warning if the mapped length of the read is greater than the predicted insert size for FR pairs on the same chromosome.
Waiting for Review
#816 opened Mar 3, 2017 by tfenne • Changes requested 3 of 5
@tfenne @yfarjoun
16
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