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343 public repositories
matching this topic...
The codebase of the OpenMS project
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Updated
Sep 21, 2020
Python
A collection of Galaxy-related training material
Updated
May 12, 2021
HTML
Various teaching material
Updated
Jan 12, 2021
HTML
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Apr 11, 2021
Python
Base Classes and Functions for Mass Spectrometry and Proteomics
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
A complete toolkit for shotgun proteomics data analysis
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Updated
Sep 14, 2020
Python
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Updated
May 10, 2021
Objective-C
Prize-Collecting Steiner Forests for Interactomes
Updated
Mar 25, 2021
Jupyter Notebook
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Updated
May 6, 2021
Python
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
Updated
Apr 19, 2021
Python
Compare different differential abundance and expression methods
Ultra fast and comprehensive peptide identification in mass spectrometry–based proteomics
Updated
Apr 30, 2021
HTML
Deep (Transfer) Learning for Peptide Retention Time Prediction
Updated
Jan 22, 2021
Python
Feature Annotation Location Description Ontology
Updated
Jan 21, 2020
XSLT
Toolbox for including enzyme constraints on a genome-scale model.
Updated
Apr 14, 2021
MATLAB
Interpretation of proteomics identification results
Updated
May 11, 2021
Java
Highly adaptable common interface for proteomics search and de novo engines
Updated
May 12, 2021
Java
PDV: an integrative proteomics data viewer
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Updated
Apr 15, 2021
HTML
Open source Java library for computational proteomics
Updated
May 11, 2021
Java
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
Updated
Aug 22, 2019
Python
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Updated
Feb 22, 2021
Python
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Updated
Aug 25, 2020
TSQL
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The following project @qinchunyuan needs to be fixed:
https://github.com/bigbio/proteomics-metadata-standard/tree/fb26f36359d8118534cf5e9025d15dcc021bb62c/annotated-projects/PXD008222
The project is a cell line project but the information about the cell-line are not included.