DiffEq related functionality for defining biological models

Automated discovery of reaction Mechanisms and Kinetics

Gillespie Stochastic Simulation Algorithm

Open Markov Proceses as TensorFlow objects, Petri Nets and Chemical Rxn Nets in Haskell

A Python package for representing reaction networks and simulating their behaviors

A python implementation of open-source packages to explore the chemical reaction space associated with elementary prebiotic chemistry.

The biological network mining workflow identifies frequent structural patterns in biochemical reaction networks encoded in the Systems Biology Markup Language (SBML)

Automated discovery of reaction Mechanisms and Kinetics

Modeling signaling networks in cancer

An interface between the Materials Project software suite and the Schrodinger Python API, designed to allow for high-throughput execution of Jaguar and AutoTS calculations for molecular thermodynamics and kinetics.

Various ODEs