SeqAn

Repositories

• seqan3

  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

  bioinformatics modern cpp17 fasta blast seqan fastq
  C++ 57 204 29 24 Updated Jun 9, 2021

• iGenVar

  The official repository for the iGenVar project.
  C++ BSD-3-Clause 5 4 27 6 Updated Jun 9, 2021

• dream_yara

  DREAM-Yara - An exact read mapper for very large databases with short update time
  C++ 2 0 0 0 Updated Jun 9, 2021

• chopper

  A tool for partitioning a set of sequences into similar batches.
  C++ BSD-3-Clause 1 1 0 0 Updated Jun 8, 2021

• www.seqan.de
  SCSS MIT 6 0 12 2 Updated Jun 8, 2021

• mars

  Motif-based aligned RNA searcher

  motif rna-structure descriptors
  C++ BSD-3-Clause 2 0 0 0 Updated Jun 8, 2021

• hibf_lib

  Work in progress for the HIBF.
  C++ BSD-3-Clause 1 1 3 0 Updated Jun 7, 2021

• raptor

  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

  filter bloom-filter threshold binning k-mer minimizer set-membership
  C++ BSD-3-Clause 7 22 2 0 Updated Jun 2, 2021

• lambda

  LAMBDA – the Local Aligner for Massive Biological DatA

  bioinformatics high-performance cpp14 metagenomics alignment protein-sequences ncbi-taxonomy
  C++ 16 60 22 1 Updated May 25, 2021

• seqan3-infrastructure

  Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.
  CMake 2 1 0 0 Updated May 20, 2021

• app-template

  This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
  CMake BSD-3-Clause 7 1 13 0 Updated May 13, 2021

• seqan

  SeqAn's official repository.

  high-performance cpp14 indexing simd alignment bwt fasta
  C++ 167 395 100 4 Updated Apr 17, 2021

• lara

  LaRA 2: Lagrangian Relaxed structural Alignment

  bioinformatics alignment rna-structure rna
  C++ 3 3 0 0 Updated Apr 16, 2021

• lemon

  Clone of the latest release of the lemon library (only the headers)
  C++ 0 3 0 0 Updated Feb 16, 2021

• metrics.seqan.de
  0 0 0 0 Updated Feb 2, 2021

• product_backlog

  This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.
  1 2 140 (5 issues need help) 1 Updated Oct 22, 2020

• learning-resources

  Provides online material and tutorials for modern C++, efficient data structures and algorithms.
  C++ 6 6 0 0 Updated Sep 14, 2020

• vaquita

  Identification of structural variations
  C++ 2 12 9 1 Updated Feb 3, 2020

• seqan-py

  Provides python bindings for SeqAn.
  1 2 1 0 Updated Dec 20, 2019

• seqansphinx

  Forked from holtgrewe/seqansphinx

  Sphinx extensions for SeqAn documentation
  Python MIT 2 0 0 0 Updated Dec 11, 2019

• flexbar

  flexible barcode and adapter removal
  C++ BSD-3-Clause 25 70 9 0 Updated Oct 29, 2019

• slimm

  Species Level Identification of Microbes from Metagenomes
  C++ 4 25 2 0 Updated Apr 30, 2019

• seqan_knime_plugin

  Build infrastructure for the seqan KNIME plugin
  Shell 0 1 11 0 Updated Sep 5, 2018

• release_scripts

  Scripts for building app and library packages and publishing of http://packages.seqan.de
  CSS MIT 1 0 0 0 Updated Jun 21, 2018

• anise_basil

  Methods for the detection and assembly of novel sequence in high-throughput sequencing data
  C++ 0 4 2 0 Updated Aug 17, 2017

• seqan3-doc

  All the scripts for generating API docs on ReadTheDocs
  Python 6 4 9 0 Updated Jul 21, 2017

• seqan3-manual

  SeqAn3 manual source, manual build utils, manual code snippets and tests for the manual code snippets.
  0 0 0 0 Updated Mar 14, 2017

• bench

  SeqAn Benchmarks
  JavaScript 4 3 0 0 Updated Mar 3, 2017

• seqan_bench_code

  SeqAn Benchmark Suite [source code]
  C++ 1 0 0 0 Updated Mar 3, 2017

• rabema

  Read mapper benchmark
  0 0 0 0 Updated May 18, 2016