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dropseq

Here are 7 public repositories matching this topic...

Hoohm / dropSeqPipe

Star

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Feb 28, 2021
R

Hoohm / CITE-seq-Count

Star

A tool that allows to get UMI counts from a single cell protein assay

single-cell 10x dropseq citeseq

Updated Jul 10, 2021
Python

BIMSBbioinfo / pigx

Star

Pipelines in genomics

snakemake genomics rnaseq guix dropseq bisulfite-sequencing chipseq

Updated Apr 29, 2021
Python

BIMSBbioinfo / pigx_scrnaseq

Star

Pipeline for analysis of Dropseq single cell data

guix snakemake-workflows dropseq single-cell-rna-seq

Updated Jul 30, 2021
Python

ComputationalSystemsBiology / Single-cell-RNA-seq

Star

Workflows for handling automatic single-cell RNA seq analysis

dropseq smartseq2

Updated Jul 31, 2018
Java

JulianSpagnuolo / adtseq

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adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

scrna-seq 10x 10x-genomics scrnaseq drop-seq dropseq dropseqtools scrna-seq-analysis citeseq cite-seq

Updated Jun 21, 2019
C++

gambalab / dropseq

Star

Pipeline to process DROP-seq data

picard dropseq single-cell-rna-seq single-cell-analysis dropseqtools star-algorithm

Updated May 25, 2021
Java

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