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workflow-management

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yiminc
yiminc commented Jun 11, 2021

Is your feature request related to a problem? Please describe.
There is an optional config for namespace called "sampled retention days" that can be specified when create a namespace. It was created long ago as workaround for long retentions before long term archival was available.

Describe the solution you'd like
We should get rid of the sampled retention.

**Describe alternatives

Ellis-Anderson
Ellis-Anderson commented Dec 11, 2020

Snakemake version
5.27.4

Describe the bug
When using a pathlib Path object to specify a conda envronment snakemake errors out. Log is below. Converting the Path object to a string serves as a workaround, however I know pathlib support has been extended lately and this seems like something that was missed.

Logs

AttributeError in line 31 of /path/to/my/file.smk:
      'Po
odin
ttymck
ttymck commented Aug 2, 2020

Describe the bug
Deploying a new job, then pulling logs via the CLI results in a panic (SIGSEGV).

To Reproduce

  1. odin deploy -f test.job.yaml
  2. odin log -i {job_id}
vagrant@vagrant:~/odin$ odin log -i dea194794589
panic: runtime error: invalid memory address or nil pointer dereference
[signal SIGSEGV: segmentation violation code=0x1 addr=0x40 pc=0x79c764]

goroutine

a web system to allow users to automatically record history and manage complicated scientific workflows in web browsers involving the online spatial data facilities, high-performance computation platforms, and open-source libraries.

  • Updated Jul 15, 2021
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