Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Per SVK's suggestion, it is worth exploring if one can use an autoencoder (regular or variational) instead of PCA for the sliding-window-based image denoising originally written by @ramav87 .
Following up on @Stoyan-I-A 's instructions for running ADS with FSLeyes on a Windows computer (see here), I'm wondering if it may be worth it to create and share a Linux OS image with ADS & FSLeyes already installed. This could lower the hurdle for users to install this (they would more or less simply need to dow
The edit-histogram button should ideally be placed so that it's connection to the histogram is clearer (e.g., top right within the histogram maybe?). For example, the button does not make much sense when the layer is collapsed, which is an indicator of suboptimal placement.
The max-box does not end on the same X as the other elements. This should not happen when the antd rows are properly
The registered atlas file is always saved in the same orientation. I understand this can be useful for some applications but in the most common case where you want to analyse your data by overlaying the atlas onto the data it is quite cumbersome because one has to track the input orientation throughout the analysis pipeline.
Is there a possibility to save the registered atlas in the same orient
The semantic segmentation models need to be extended to work with 3D data. This should be very straightforward - just introduce an option to select between 1D, 2D, and 3D cases to ConvBlock, [UpsampleBlock](https://g
Per SVK's suggestion, it is worth exploring if one can use an autoencoder (regular or variational) instead of PCA for the sliding-window-based image denoising originally written by @ramav87 .
@saimani5 @markpoxley will you be interested in exploring it?