We could also overwrite the experimental design generated from the SDRF but I don't know if that gets even more confusing.
Maybe in the long run we even deprecated the "--expdesign" parameter and require an SDRF? But the "--input foo.mzML --expdesign des.tsv" is just very convenient for quick analyses.
A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.
We could also overwrite the experimental design generated from the SDRF but I don't know if that gets even more confusing.
Maybe in the long run we even deprecated the "--expdesign" parameter and require an SDRF? But the "--input foo.mzML --expdesign des.tsv" is just very convenient for quick analyses.