BioJulia

Repositories

• FormatSpecimens.jl

  Biological file format specimens for testing packages, and functions to assist in testing.
  Julia 2 6 0 0 Updated Jul 21, 2021

• PopGen.jl

  Population Genetics in Julia

  snps genomics genetics structure popgen fst microsatellites
  Julia MIT 17 12 0 0 Updated Jul 21, 2021

• BiobakeryUtils.jl

  A companion package for Microbiome.jl for working with the Biobakery family of computational tools
  Julia 2 2 3 1 Updated Jul 21, 2021

• BioSequences.jl

  Biological sequences for the julia language

  bioinformatics biology biological-sequences biojulia
  Julia MIT 34 87 8 3 Updated Jul 21, 2021

• BioGenerics.jl

  Generic methods, types and modules for the BioJulia ecosystem.
  Julia MIT 3 6 2 1 Updated Jul 20, 2021

• BioAlignments.jl

  Sequence alignment tools

  bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis
  Julia MIT 18 34 11 3 Updated Jul 18, 2021

• FASTX.jl

  Parse and process FASTA and FASTQ formatted files of biological sequences.

  parsing julia bio file-format fasta fastq-format fastq
  Julia MIT 12 29 2 3 Updated Jul 17, 2021

• BGZFStreams.jl

  BGZF Stream

  bioinformatics julia
  Julia 9 11 3 2 Updated Jul 17, 2021

• Microbiome.jl

  For analysis of microbiome and microbial community data

  biology julia-language microbiome ecology
  Julia 7 28 4 0 Updated Jul 16, 2021

• XAM.jl

  Parse and process SAM and BAM formatted files

  bam-files bioinformatics sam bam biojulia sam-files sam-format
  Julia MIT 7 10 12 (1 issue needs help) 3 Updated Jul 16, 2021

• Indexes.jl

  tabix
  Julia MIT 4 2 0 1 Updated Jun 28, 2021

• GFF3.jl

  bioinformatics gff3 gff3-files gff3-format
  Julia MIT 2 4 1 1 Updated Jun 27, 2021

• GenomicFeatures.jl

  Tools for genomic features in Julia.
  Julia 11 22 2 1 Updated Jun 25, 2021

• BED.jl

  bioinformatics bed-format
  Julia MIT 3 3 0 1 Updated Jun 23, 2021

• BioStructures.jl

  A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

  bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics
  Julia 14 48 2 0 Updated Jun 17, 2021

• BioSymbols.jl

  Nucleic and amino acid primitive types

  bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids
  Julia MIT 10 17 1 0 Updated Jun 16, 2021

• FMIndexes.jl

  FM-index for full-text search
  Julia 9 16 1 1 Updated Jun 8, 2021

• GenomicAnnotations.jl

  bioinformatics gff3 biology julia genbank genes genome-annotation
  Julia MIT 0 4 0 0 Updated Jun 8, 2021

• BioFetch.jl

  Easily fetch biological sequences from online sources
  Julia MIT 1 2 0 0 Updated May 28, 2021

• MMTF.jl

  A julia package to parse and write MMTF file

  bioinformatics pdb julia-package mmtf rcsb
  Julia MIT 3 7 0 0 Updated May 27, 2021

• BioTutorials

  Tutorial Notebooks of BioJulia

  julia
  Jupyter Notebook 3 22 1 3 Updated May 4, 2021

• Automa.jl

  A julia code generator for regular expressions

  julia regular-expression
  Julia 12 120 6 2 Updated Apr 30, 2021

• Kmers.jl

  In development: Kmer types and methods for julia
  Julia 3 4 4 2 Updated Apr 27, 2021

• BioServices.jl

  Julia interface to APIs for various bio-related web services
  Julia 15 14 5 (1 issue needs help) 1 Updated Apr 22, 2021

• PopGen.jl_archive Archived

  Population Genetics functions in Julia.
  Julia MIT 0 7 1 1 Updated Mar 11, 2021

• KmerAnalysisMakie.jl

  Makie recpies for visualising KmerAnalysis types and results.
  Julia MIT 0 2 0 0 Updated Nov 3, 2020

• biojulia.github.io

  BioJulia's Website
  HTML 3 2 2 0 Updated Oct 17, 2020

• GeneticVariation.jl

  Datastructures and algorithms for working with genetic variation

  bioinformatics snps biology julia mutation polymorphism variation
  Julia MIT 13 26 10 1 Updated Sep 11, 2020

• academic-kickstart

  Forked from wowchemy/starter-hugo-academic

  Easily create a beautiful website using Academic and Hugo
  Shell MIT 5,048 5 0 0 Updated Sep 10, 2020

• KmerAnalysis.jl

  K-mer counting algorithms and count-data utilities for the BioJulia framework

  kmer kmer-frequency-count kmer-distribution kmer-counting biojulia kmer-composition kmers
  Julia MIT 2 7 1 0 Updated Aug 29, 2020