imageio

The documentation of the FFMPEG plugin only lists a subset of all formats supported by FFMPEG (via imageio-ffmpeg). It would be a very welcome contribution if somebody could update the list of formats to those actually supported (ImageIO should support all the formats that FFMPEG supports).

The full list of formats is available here: https://ffmpeg.org/ffmpeg-formats.html (muxers are for writin

In determining the correct reader for the file provided we currently have two options (as of #224).

1. Providing reader param to AICSImage (i.e. img = AICSImage("s3://some-file.ext", reader=readers.lif_reader.LifReader)
2. Not providing a reader, and AICSImage looping over all SUPPORTED_READERS.

Option 1 is the fastest + safest method for loading a file into AICSImage (without using

I create a BufferedImage with TYPE_USHORT_GRAY, ImageIO.write will encode this properly as 16-bit grayscale, but PngEncoder saves it as 8-bit truecolor.

Would be great if this could support single file optimization instead of only directories. So a single mov could me processed to mp4.

This would require making the loop an if case and make the args required for the specified file type to optimize.

Add functions instead of separate code. Also add a few lines of code so that the flow can be continuous. I will like to ask someone if they like to continue or not after saving/not saving image and again run the code from asking filter number and showing and saving image.