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synbio

Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.

Here are 17 public repositories matching this topic...

Edinburgh-Genome-Foundry / DnaChisel

Star

✏️ A versatile DNA sequence optimizer

bioinformatics synthetic-biology synbio sequence-design dna-optimization codon-optimization

Updated Apr 28, 2021
Python

poly

TimothyStiles / poly

Sponsor Star

A Go package for engineering organisms.

bioinformatics genomics gff3 biology synthetic-biology computational-biology dna genbank fasta molecular-biology synbio bioengineering primer-design plasmids sponsor codon-optimizer genetic-engineering engineering-organisms sequence-hashing

Updated May 16, 2021
Go

JBEI / KineticLearning

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Learning Kinetic Models from Time Series Proteomics and Metabolomics Data

machine-learning synbio kinetic-modeling

Updated Jan 9, 2020
Jupyter Notebook

Edinburgh-Genome-Foundry / codon-usage-tables

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📊 Codon usage tables in code-friendly format + Python bindings

bioinformatics synbio codon-optimization codon-usage

Updated Feb 10, 2021
Python

Edinburgh-Genome-Foundry / genome_collector

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🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

python bioinformatics synthetic-biology blast taxid ncbi bowtie synbio

Updated Nov 12, 2019
Python

Edinburgh-Genome-Foundry / genedom

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Batch domestication of genetic parts with Python

synthetic-biology synbio dna-assembly sequence-design part-domestication

Updated Sep 20, 2020
Python

JBEI / edd

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Repository of standardized biological experimental data and metadata

Updated May 12, 2021
Python

Edinburgh-Genome-Foundry / _We_Are_Hiring_

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👋 No open positions at the moment but don't hesitate to get in touch

synthetic-biology lab-automation synbio dna-assembly genome-foundry

Updated Sep 26, 2019

ayaanhossain / nrpcalc

Star

Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems

calculator design algorithm repeats synthetic-biology computational-biology discovery path systems stable cover finding vertex parts genetic synbio nrp non-repetitive

Updated Apr 26, 2021
Python

JBEI / PIACE

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Parallel Integration and Chromosomal Expansion of Metabolic Pathways Machine Learning Analysis

machine-learning bioinformatics bioinformatics-analysis synbio

Updated Aug 14, 2018
Jupyter Notebook

mycql / yapv

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A library for creating plasmid feature maps with zero external dependencies.

svg canvas viewer dna plasmid synbio molbio

Updated May 9, 2021
TypeScript

TimothyStiles / how-to-synbio

Sponsor Star

The resources I always recommend to new synthetic biologists.

synthetic-biology awesome-list getting-started synbio genetic-engineering awesome-synthetic-biology awesome-synbio

Updated Apr 27, 2021

BiocomputeLab / paraSBOLv

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Lightweight Python library to simplify the development of tools that render SBOL Visual diagrams.

svg sbol synbio biodesign sbolv sbol-visual

Updated May 15, 2021
Python

olgatsiouri1996 / bioinfo_gui_scripts

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python scripts that can be easily trasformed to gui programs for wet lab scientists to use

python data-mining gui bioinformatics statistics cross-platform pdb gooey fasta synbio

Updated Apr 26, 2021
Python

olgatsiouri1996 / biomisc

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collection of miscellaneous command line bioinformatic scripts

data-mining bioinformatics statistics cross-platform pdb fasta command-line-tool synbio

Updated Apr 26, 2021
Python

brsynth / rpbasicdesign

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Convert rpSBML file to SBOL + CSV files ready to be used by DNA-Bot.

Updated Apr 14, 2021
Python

sboltools / sbolgraph

Star

A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

bioinformatics biology sbol synbio

Updated Mar 17, 2021
TypeScript

Wikipedia: Wikipedia