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dna
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
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Aug 9, 2021 - Python
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
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Updated
Aug 13, 2021 - Python
tools for working with genome variation graphs
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Updated
Aug 13, 2021 - C++
Python and C++ code for reading and writing genomics data.
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Jul 26, 2021 - C++
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
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Mar 31, 2021 - Python
3d engine implementation in DNA code!
biology
dna
chemical-kinetics
cube
3d
chemical-reaction-networks
molecular-biology
3d-engine
chemical-reactions
raymarching
in-vitro
piperine
strand-displacement
molecular-programming
real-reactive-programming
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Nov 29, 2020
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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May 27, 2020 - Julia
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
jupyter-notebook
dna
rosetta
rna-structure-prediction
protein-design
protein-folding
protein-structure-prediction
google-colab
pyrosetta
protein-docking
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Aug 4, 2021 - Jupyter Notebook
A Go package for engineering organisms.
bioinformatics
synthetic-biology
computational-biology
dna
genbank
fasta
molecular-biology
synbio
bioengineering
primer-design
golden-gate
dna-barcode
plasmids
dna-barcoding
codon-optimizer
genetic-engineering
sequence-assembly
engineering-organisms
sequence-hashing
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Aug 12, 2021 - Go
UGENE is free open-source cross-platform bioinformatics software
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Aug 13, 2021 - C++
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
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Aug 18, 2019 - Python
ivan-aksamentov
commented
Jun 14, 2021
We might want to give users a hint that Nextclade requires a lot of memory in case there are many sequences.
We can simply take fasta files size and upon some threshold to show a reactstrap alert informing users about that fact and recommend them splitting their datasets in multiple chunks as well as common memory-freeing steps.
It is essential to explain that all computation is happening o
Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.
python
bioinformatics
jupyter
anaconda
simulation
biology
jupyter-notebook
dna
biopython
gel
jupyter-notebooks
anaconda-server-badge
pydna
gel-simulation
gibson-assembly
cloning-strategies
gel-electrophoresis
assembly-strategies
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Aug 5, 2021 - Jupyter Notebook
tools for genetic genealogy and the analysis of consumer DNA test results
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Jun 22, 2021 - Python
DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.
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Jun 16, 2021 - JavaScript
Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Oct 2, 2019 - HTML
A fast 23andMe genome text file parser, now superseded by arv
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Nov 12, 2017 - Python
Visualizing DNA Sequences via Javascript
visualization
javascript
html
bootstrap
html5
canvas
visual
bootstrap4
dna
sequence
visualizing
visualizing-dna-sequences
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Feb 3, 2020 - JavaScript
A curated list of awesome bioinformatics software.
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Dec 10, 2017
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Is there a schedule to add the deprecation warning as per:
https://github.com/biopython/biopython/blob/870f623005ed1b95df877f618cbb12a815bd5696/Bio/SeqFeature.py#L158-L175