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deciphering microbial genomes
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deciphering microbial genomes
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Arctic Code Vault Contributor

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Arctic Code Vault Contributor

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@ag-computational-bio
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oschwengers/README.md

Hello 👋

I'm a bioinformatician and PhD candidate working in the field of microbial genomics. Besides hands-on analysis of microbial WGS data, I'm especially interested in the development of bioinformatics software tools to analyze bacterial WGS data with a special turn towards plasmids.

Pinned

  1. bakta

    Rapid & standardized annotation of bacterial genomes & plasmids

    Python 79 11

  2. asap

    A scalable bacterial genome assembly, annotation and analysis pipeline

    Groovy 37 11

  3. platon

    Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

    Python 41 8

  4. referenceseeker

    Rapid determination of appropriate reference genomes.

    Python 59 4

691 contributions in the last year

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Activity overview
Contributed to oschwengers/bakta, oschwengers/referenceseeker, oschwengers/platon and 5 other repositories

Contribution activity

August 2021

Created 16 commits in 1 repository
Created 1 repository

Created an issue in ncbi/amr that received 7 comments

Accumulating database symlinks on /tmp

Hi, thanks for this great piece of software - we use it a lot! We recognized that amrfinder writes empty files and symlinks to /tmp which are not r…

7 comments
Opened 1 other issue in 1 repository
oschwengers/bakta 1 closed

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