bioBakery

Pinned

1. biobakery_workflows Public

   bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

   Python 42 14

2. humann Public

   HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

   Python 68 35

3. MetaPhlAn Public

   MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

   Python 104 50

4. phylophlan Public

   Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

   Python 53 23

5. Maaslin2 Public

   MaAsLin2: Microbiome Multivariate Association with Linear Models

   R 43 20

6. kneaddata Public

   Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

   Python 34 17