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reference-genome

Here are 15 public repositories matching this topic...

Hoohm / dropSeqPipe

Star

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Feb 28, 2021
R

refgenie / refgenie

Star

Reference genome resource manager

api-client reference-genome

Updated Aug 31, 2021
Python

Genomicsplc / variantkey

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Numerical Encoding for Human Genetic Variants

genomics position vcf dna variants base chromosome genetic reference-genome nucleotides lookup-table vcf-format rsid human-genetic-variants reference-allele alternate-allele variant-normalization reference-position variantkey

Updated Sep 5, 2019
C

refgenie / refgenieserver

Star

Serves a web interface and RESTful API for reference genome assets.

docker-container api-server genome-assembly reference-genome

Updated Sep 2, 2021
Python

grev-uv / hpg-methyl

Star

An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.

reference-genome fastq-analysis methylation-extractor

Updated Dec 4, 2019
C

standage / genhub

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Explore eukaryotic genome composition and organization with iLoci

annotation genome reference-genome iloci

Updated Sep 5, 2019
Python

tseemann / polyfix

Star

🔪

⛓️ Repair nanopore assemblies using related genome(s)

correction genome-assembly reference-genome indel-finder nanopore-sequencing

Updated Aug 19, 2019
Perl

EmilieT / mutcraft

Star

R tools to mine & craft somatic mutations from cancer genomes

somatic-variants signature mutations whole-genome-sequencing reference-genome

Updated May 23, 2017
R

refgenie / refgenconf

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A Python object for standardized reference genome assets.

reference-genome pythonapi refgenie

Updated Aug 30, 2021
Python

superphy / prairiedog_go

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probability emitting pangenome graphs

graph variants reference-genome pan-genome

Updated Aug 2, 2019
Go

visheshsinha / DNA_Sequencing

Star

Open

Add DeBruijn and GreedySCS in README

1

visheshsinha commented Jul 29, 2020

Update the implementation and resources for DeBruijn Graph and Greedy Shortest Common Super String Algorithm in README.md

Read more

documentation good first issue

shumengjun / TASSEL_GBS_V2

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Calling SNPs using TASSEL GBS V2 pipeline for ponderosa pine using the reference genome of loblolly pine

pipeline vcf snp pine reference-genome

Updated Feb 20, 2020
Shell

kerrimalone / M.bovis-AF2122-genome-update

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Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97

pacbio genome-assembly illumina-sequencing de-novo-assembly reference-genome mycobacterium-bovis genome-update mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122

Updated Jun 20, 2017
Shell

AnimalGenomicsETH / Reference_assembly_choice

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Repository including scripts and workflows for "Investigating the impact of reference assembly choice on genomic analyses in a cattle breed"

bioinformatics genomics reference-genome

Updated May 3, 2021
Jupyter Notebook

Nazeeefa / bioinfo_nf

Star

python bioinformatics genomics rstudio rstats reference-genome

Updated Mar 6, 2021
Python

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