Here are
61 public repositories
matching this topic...
An analysis and visualization platform for 'omics data
Updated
Aug 12, 2021
Python
Efficient phylogenomic software by maximum likelihood
💾 📃 "Reads to report" for public health and clinical microbiology
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Jul 26, 2021
HTML
A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic taxonomy
Updated
Jan 31, 2021
Perl
Workflow for Building Microsynteny Networks
Updated
May 8, 2021
Shell
Hybridization detection using phylogenetic invariants
Updated
Jul 23, 2019
Python
Phylogenetic Likelihood Library
NGSphy: phylogenomic simulation of next-generation sequencing data
Updated
Mar 9, 2018
Python
Multisample Variant Format ToolKit
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
Updated
Jul 22, 2021
HTML
A tool for divide-and-conquer tree estimation via a shared distance matrix
Updated
Mar 19, 2019
Python
The BioJulia package for working with phylogenetic trees and geneologies.
Updated
Jun 22, 2018
Julia
Clann: constructing consensus trees and supertrees from multiple source trees
Utility script to construct species phylogenies using BUSCO results
Updated
Mar 28, 2021
Python
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Aug 10, 2021
HTML
Phylogenomics analyses for 1KFG project
Updated
Nov 16, 2017
Shell
common bioinformatic scripts
Updated
Apr 28, 2021
Perl
Hybridization Detection with Convolutional Neural Networks
Updated
Jan 26, 2021
Python
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
Updated
Oct 16, 2017
HTML
Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
Updated
Sep 10, 2020
Python
Parsimonious delimitation of large SNP datasets using the four gamete test
Updated
Feb 6, 2020
Python
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
Updated
May 28, 2021
Python
Species tree estimation from multi-copy gene trees
Updated
Jul 13, 2020
Python
scripts to add new proteins to alignment using hmms
Updated
May 4, 2020
Python
Machete: Automated Likelihood decay indices and Maximum likelihood phlyogeny construction with PAUP*
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Updated
May 21, 2021
Shell
Updated
Mar 13, 2021
HTML
phylogenetic visualization application
Updated
Oct 24, 2017
JavaScript
Improve this page
Add a description, image, and links to the
phylogenomics
topic page so that developers can more easily learn about it.
Curate this topic
Add this topic to your repo
To associate your repository with the
phylogenomics
topic, visit your repo's landing page and select "manage topics."
Learn more
You can’t perform that action at this time.
You signed in with another tab or window. Reload to refresh your session.
You signed out in another tab or window. Reload to refresh your session.