wdl

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Workflow Description Language - Specification and Implementations

📦 Package manager for REAPER

Workflow Description Language developer tools & local runner

Our VM/Docker sharing infrastructure and management component

The WES API is a standard way to run and manage portable workflows.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

A collection of reusable WDL tasks. Category:Other

CLI for interacting with Cromwell servers

Workflow Description Language compiler for the DNAnexus platform

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

An opinionated Cromwell orchestration manager.

[Experimental] Workflow Definition Language (WDL) to CWL

Rich IDE support for Workflow Description Language

APIs for discovering genomics tools, their metadata and their containers

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

Create WDL documentation using Markdown.

Configure workflow/pipeline tests using yaml files.

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

Website user interface for Dockstore in Angular2

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Interoperable execution of workflows using GA4GH APIs

🐖 Command-line interface for Cromwell server

Project for 5th Semester Subject -> WDL & DBMS

A pipeline for somatic variantcalling. Category:Single-Sample

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

WDL (Workflow Description Language) major mode