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shenwei356/README.md

Wei Shen 沈伟

Postdoctoral researcher
Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

  • 🔬 I’m currently working on microbial genomics and metagenomics.
  • 🔭 I'm passionate about reproducible research and open-source software.

Learn more: http://shenwei.me

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).

Pinned

  1. kmcp Public

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Go 44 3

  2. unikmer Public

    Toolkit for nucleic acid k-mer analysis, including set operations on k-mers (sketch) optional with TaxIDs but without count information.

    Go 40 6

  3. seqkit Public

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

    Go 788 116

  4. taxonkit Public

    A Practical and Efficient NCBI Taxonomy Toolkit

    Go 155 18

  5. csvtk Public

    A cross-platform, efficient and practical CSV/TSV toolkit in Golang

    Go 684 68

  6. rush Public

    A cross-platform command-line tool for executing jobs in parallel

    Go 543 44

689 contributions in the last year

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Activity overview
Contributed to shenwei356/kmcp, shenwei356/seqkit, shenwei356/csvtk and 5 other repositories

Contribution activity

February 2022

Created 24 commits in 5 repositories
Created 1 repository

Created a pull request in bioconda/bioconda-recipes that received 4 comments

Update KMCP to 0.7.1

Describe your pull request here Update KMCP to v0.7.1 Please read the guidelines for Bioconda recipes before opening a pull request (PR). If this…

+3 −3 • 4 comments
Opened 1 other pull request in 1 repository
hzi-bifo/cami2_pipelines 1 merged

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