Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
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Sep 8, 2021 - Common Workflow Language
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Common Workflow Language
CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.
Here are 182 public repositories matching this topic...
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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Sep 16, 2021 - Python
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
docker
application
workflow
cloud
bioinformatics
scala
executor
hpc
containers
wdl
common-workflow-language
ga4gh
cwl
workflow-description-language
workflow-execution
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Sep 15, 2021 - Scala
Visual and code editor for Common Workflow Language
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Sep 1, 2021 - TypeScript
Python package to extend Airflow functionality with CWL1.1 support
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Sep 15, 2021 - Python
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk/
machine-learning
analytics
cpp
cancer
cpp11
medical-imaging
cancer-imaging-research
image-analysis
medical-image-computing
cwl
itcr
radiomics
medical-image-processing
nih
nci
nci-itcr
radiomics-features
cwltool
u24
cbica
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Sep 1, 2021 - C++
Our VM/Docker sharing infrastructure and management component
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Sep 15, 2021 - Java
REANA: Reusable research data analysis platform
kubernetes
reproducible-research
containers
cwl
research-data
reproducible-workflows
reusable-science
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Sep 15, 2021 - Python
A library for generating an interactive SVG visualization of CWL workflows
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Mar 18, 2021 - TypeScript
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
docker
aws
bioinformatics
snakemake
aws-lambda
pipelines
conda
wdl
cwl
aws-step-function
wdl-workflow
cwl-workflow
snakemake-workflow
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Sep 15, 2021 - Python
CWL CommandLineTool descriptions for biology/life-sciences related applications
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May 25, 2021 - Common Workflow Language
A language server for Common Workflow Language
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May 11, 2021 - Python
Typescript data model for Common Workflow Language
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Sep 14, 2021 - TypeScript
NLP pipeline software using common workflow language
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Apr 22, 2019 - Python
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
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Sep 1, 2021 - Python
A web application to view and share Common Workflow Language workflows
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Sep 13, 2021 - Java
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
docker
aws
workflow
bioinformatics
workflow-engine
gcp
docker-machine
wdl
batch-job
cwl
etl-framework
wdl-workflow
cwl-workflow
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Nov 14, 2018 - Go
An opinionated Cromwell orchestration manager.
workflow
bioinformatics
genomics
hpc
next-generation-sequencing
bioinformatics-pipeline
wdl
cwl
cromwell
wdl-workflow
cwl-workflow
workflow-execution
oliver
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Jan 11, 2021 - Python
[Experimental] Workflow Definition Language (WDL) to CWL
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Jul 2, 2020 - Python
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
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Sep 9, 2021 - Common Workflow Language
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
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Mar 19, 2019 - Go
Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community
Released January 2015
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- common-workflow-language
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- www.commonwl.org
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common-workflow-language/common-workflow-language#915