Skip to content
Avatar
🔦
🔦
43 followers · 54 following

Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor
BetaSend feedback

Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor
BetaSend feedback

Highlights

  • Pro

Organizations

@monarch-initiative @UCLA-BD2K
Block or Report

Block or report caufieldjh

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
caufieldjh/README.md

Pinned

  1. awesome-bioie Public

    🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

    211 23

  2. Knowledge-Graph-Hub/kg-obo Public

    A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub

    Python 11 1

  3. Knowledge-Graph-Hub/kg-idg Public

    A Knowledge Graph to Illuminate the Druggable Genome

    Python 1 2

  4. ncbo/BioPortal-to-KGX Public

    Assemble a BioPortal Knowledge Graph

    Python 1 1

  5. Knowledge-Graph-Hub/kg-phenio Public

    A Graph for experiments doing ML on ontologies.

    Python 1

  6. Knowledge-Graph-Hub/neat-ml Public

    Network Embedding All the Things

    Python 9 1

2,768 contributions in the last year

Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Mon Wed Fri
Learn how we count contributions
Less More

Contribution activity

August 2022

Created 107 commits in 9 repositories
Created 1 repository

Created a pull request in Knowledge-Graph-Hub/semsim that received 13 comments

Refactoring to work with PHENIO and use more generalizable frequencies

As per plan suggested by @justaddcoffee: ingest Phenio preprocess it into a DAG Filter to subclass_of edges, transpose, and remove disconnected …

+414 −148 • 13 comments
Opened 12 other pull requests in 8 repositories
ncbo/BioPortal-to-KGX 1 open 2 merged
ncbo/kg-bioportal 2 open 1 merged
linkml/prefixmaps 1 merged
monarch-initiative/phenio 1 open
Knowledge-Graph-Hub/kg-phenio 1 merged
Knowledge-Graph-Hub/kg-obo 1 open
monarch-initiative/embiggen 1 merged
Knowledge-Graph-Hub/kg-idg 1 merged
Reviewed 4 pull requests in 3 repositories
Knowledge-Graph-Hub/semsim 2 pull requests
monarch-initiative/phenio 1 pull request
INCATools/ontology-access-kit 1 pull request

Created an issue in ncbo/kg-bioportal that received 10 comments

Current merge behavior takes a long time

As of 2d89e7b, the Jenkins graph merge takes a very long time (or may never complete). I started it on Aug 4, 2:16 PM and the merge was still in pr…

10 comments
Opened 14 other issues in 9 repositories
Knowledge-Graph-Hub/semsim 4 open
Knowledge-Graph-Hub/kg-obo 2 open
ncbo/BioPortal-to-KGX 1 closed 1 open
monarch-initiative/embiggen 1 open
monarch-initiative/phenio 1 open
Knowledge-Graph-Hub/kg-phenio 1 closed
AnacletoLAB/grape 1 closed
ncbo/kg-bioportal 1 open
Knowledge-Graph-Hub/kg-idg 1 closed
1 contribution in private repositories Aug 26

Seeing something unexpected? Take a look at the GitHub profile guide.