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  • University of Utrecht
  • Utrecht, Netherlands
  • Twitter @brent_p

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@kortschak

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@quinlan-lab
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Pinned

  1. slivar Public

    variant expressions, annotation, and filtering for great good.

    Nim 140 11

  2. mosdepth Public

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 430 73

  3. goleft Public

    goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

    Go 184 22

  4. hts-nim Public

    nim wrapper for htslib for parsing genomics data files

    Nim 135 21

  5. vcfanno Public

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 266 49

  6. somalier Public

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 146 20

717 contributions in the last year

Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Mon Wed Fri

Contribution activity

September 2021

Created 1 repository
Opened 1 pull request in 1 repository
IARCbioinfo/alignment-nf 1 open
Reviewed 1 pull request in 1 repository
brentp/bwa-meth 1 pull request

Created an issue in kaist-ina/BWA-MEME that received 3 comments

license clarification

is the LICENSE file in the repo for bwa-meme? (It appears to be for bwa-mem2). What is the exact license for bwa-meme? thanks.

3 comments
Opened 1 other issue in 1 repository
PapenfussLab/gridss 1 closed

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