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Apr 23, 2021 - HTML
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manuscript
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A collaboratively written review paper on deep learning, genomics, and precision medicine
papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
r
apa
journal
reproducible-research
rmarkdown
psychology
manuscript
reproducible-paper
apa-guidelines
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Oct 19, 2021 - R
r
apa
reporting
models
automatic
reports
report
rstats
scientific
bayesian
manuscript
hacktoberfest
statsmodels
describe
automated-report-generation
easystats
anovas
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Nov 7, 2021 - R
Clone me to create your Manubot manuscript
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Nov 8, 2021 - HTML
An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.
science
journal
citation
citations
scopus
scientific
manuscript
scientometrics
coupling
co-occurence
citation-network
scholars
quantitative-analysis
correspondence-analysis
bibliometrics
co-authors
science-mapping
isi-web
co-word-analysis
bibliometric-analysis
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Oct 29, 2021 - R
Ten Quick Tips for Deep Learning in Biology
data-science
machine-learning
bioinformatics
deep-learning
genomics
biology
computational-biology
manuscript
manubot
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Oct 26, 2021 - HTML
backer
sponsors
publishing
academic-publishing
manuscript
journal-management
ojs
assistant-personnel
vipa
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Oct 25, 2017 - PHP
AutoLayoutKit in pure Swift.
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Apr 19, 2017 - Swift
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
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Apr 30, 2021
Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016
data
machine-learning
research
paper
gene-expression
dataset
neural-networks
methodology
manuscript
autoencoders
denoising-autoencoders
pseudomonas-aeruginosa
supplement
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May 26, 2016 - Python
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Mar 20, 2020 - TeX
A repository to practice contributing to a Manubot manuscript
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Sep 11, 2021 - HTML
An example of using make for a data analysis project
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May 6, 2019 - R
Manuscript for the Sci-Hub Coverage Study
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Mar 19, 2020 - HTML
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
manuscript
biomarker-discovery
immunotherapy
reproducible-analysis
analysis-report
tumor-immunogenicity
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Sep 16, 2021 - R
Code for the empty droplet and cell detection project from the HCA Hackathon.
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Feb 26, 2019 - TeX
Code and manuscript files for Aaron and Karsten's deconvolution paper.
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Nov 18, 2018 - TeX
A pandoc-based layout workflow for scholarly journals. It relies on markdown, YAML and pandoc to obtain multiple publication formats
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Aug 20, 2020 - Shell
Collection of scripts to download digitized manuscripts from various online libraries
python
pdf
library
downloader
download
calligraphy
manuscript
elibrary
manuscript-dl
download-digitized-manuscripts
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Apr 21, 2019 - Python
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Oct 17, 2017 - R
#Mentor4Nepal Initiative is for recent graduates and early career professionals focusing on the enhancement of one’s skill set, support for a research project, and a collaborative publication.
students
research
publication
nepal
manuscript
mentoring
student-project
graduates
early-career-researcher
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Nov 2, 2021
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Dec 17, 2018 - TeX
SNP genotyping in polyploids
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Aug 12, 2020 - C++
Code and manuscript files for Aaron's plate effect paper.
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Dec 8, 2017 - PostScript
Markdown source for the Project Rephetio Manuscript https://doi.org/10.7554/eLife.26726
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Nov 20, 2019 - HTML
Open
Issues
1
russelljjarvis
commented
Oct 27, 2019
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Maybe connecting plots one and two so they pop up together in one window as subplots. In the same window mainly for convenience of review more than anything.
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Any other final coding steps to ensure robustness and usability. I’m not sure what this means, but basically feeling ok about the code being seen and used that nothing odd will come out of it.
Werthmüller, D., R. Rochlitz, O. Castillo-Reyes, and L. Heagy, 2021, Towards an open-source landscape for 3-D CSEM modelling: Geophysical Journal International, 227(1), 644--659
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Sep 24, 2021 - Jupyter Notebook
Analysis of ISCB Fellows and Keynotes Reveals Disparities
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Sep 7, 2021 - HTML
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I removed several headings that had been added early on in brainstorming for this manuscript. If anyone is looking for ideas of how to contribute, you could definitely look into how these drug development strategies are being applied to COVID-19!
Additionally, here is the template for adding in