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josedolz / LiviaNET

Star 153

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

deep-neural-networks theano deep-learning architecture cnn mri medical-imaging neural-networks deep-learning-algorithms neuroimaging convolutional-networks convolutional-neural-networks image-segmentation nifti-format neuroimage medical-image-processing 3d-convolutional-network 3d-cnn scale-study medical-image-analysis medical-image-segmentation brain-segmentation
  • Updated Nov 20, 2019
  • Python
spinalcordtoolbox

spinalcordtoolbox / spinalcordtoolbox

Star 129
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`-list-labels` crashes when pointing to another non-default atlas location

jcohenadad
jcohenadad commented Dec 20, 2021

Description

When listing the labels ID using an atlas that is not located at label/atlas/, the command crashes:

Terminal output 
julien-macbook:~ $ sct_extract_metric -list-labels -f ~/code/sct/data/PAM50/atlas/

--
Spinal Cord Toolbox (git-master-7fd2ea718751dd858840c3823c0830a910d9777c*)

sct_extract_metric -list-labels -f /Users/julie
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bug sct_extract_metric good first issue
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zaccharieramzi / fastmri-reproducible-benchmark

Star 90
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