Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Seattle, WA
https://alleninstitute.org
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ophys_etl_pipelines Public
Pipelines and modules for processing optical physiology data

Python 3 3 64 2 Updated Feb 3, 2022
neuroanalysis Public
Modular analysis tools for neurophysiology data

Python 5 MIT 18 1 1 Updated Feb 3, 2022
aisynphys Public
Analysis tools specific to the aiephys multipatch project.

Python 5 19 1 1 Updated Feb 3, 2022
AllenSDK Public
code for reading and processing Allen Institute for Brain Science data

Jupyter Notebook 248 123 298 (3 issues need help) 6 Updated Feb 2, 2022
MIES Public
Multichannel Igor Electrophysiology Suite

IGOR Pro 15 4 188 (1 issue needs help) 8 Updated Feb 2, 2022
mtrain_regimens Public
Repository to track training stages and regimens for visual behavior

Python 1 3 12 1 Updated Feb 2, 2022
cortical_coordinates Public
Code and scripts for used in the generation of cortical streamlines and coordinates for the Allen CCF

C++ 0 0 0 0 Updated Feb 2, 2022
volume-viewer Public

TypeScript 81 6 0 0 Updated Feb 1, 2022
cellcount Public
Codes for generating pixel-wise ground truth from point annotations of cells, and a simple unet model to estimate cell counts in a 2 channel dataset.

Jupyter Notebook 0 0 0 0 Updated Feb 1, 2022
deepinterpolation Public

Python 169 34 11 2 Updated Feb 1, 2022

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