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picard

Here are 31 public repositories matching this topic...

Borewit / music-metadata

Sponsor

Stream and file based music metadata parser for node. Supporting a wide range of audio and tag formats.

Updated Apr 22, 2022
TypeScript

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Feb 28, 2021
R

picard-plugins

metabrainz / picard-plugins

Sponsor

Picard plugins: use 1.0 branch for Picard < 2.0 (python 2/Qt4) and 2.0 branch for Picard >= 2.0 (python 3/Qt5)

python picard musicbrainz musicbrainz-picard

Updated Apr 9, 2022
Python

Borewit / musicbrainz-api

Sponsor

slowkow / picardmetrics

🚦 Run Picard on BAM files and collate 90 metrics into one file.

picard bam-files bioinformatics quality-control rna-seq

Updated Sep 27, 2017
Shell

PicardBarcodeScanner

phw / PicardBarcodeScanner

Sponsor

Use your Android phone to load releases in MusicBrainz Picard.

android kotlin music picard musicbrainz audio-applications musicbrainz-picard

Updated Feb 8, 2022
Kotlin

hashhar / picard-beets-config

MusicBrainz Picard tagger scripts, config and beets config

music picard beets musicbrainz musicbrainz-picard beets-configuration

Updated Apr 13, 2020
Shell

picard-docs

metabrainz / picard-docs

Sponsor

Documentation for MusicBrainz Picard

documentation picard sphinx musicbrainz musicbrainz-picard

Updated Apr 9, 2022
Python

weisslj / picardplugins

Plugins for MusicBrainz Picard

python picard plugins musicbrainz musicbrainz-picard

Updated Apr 30, 2017
Python

phw / musicbrainz-magic-tagger-button

Sponsor

Browser user script to automatically enable the green tagger button on musicbrainz.org

javascript picard userscript musicbrainz musicbrainz-picard

Updated Feb 12, 2022
JavaScript

modupeore / VAP

VAP : For Reference mapping and Variant detection.

picard bioinformatics snps pipeline gatk variants star hisat2 bwa bowtie tophat2

Updated Jan 26, 2022
Perl

musicbrainz-picard-snap

phw / musicbrainz-picard-snap

Sponsor

Code for snapping MusicBrainz Picard.

picard snap musicbrainz snapcraft musicbrainz-picard

Updated Oct 18, 2021
Shell

GoodforGod / ConcurrentPicardELC

Picard ELC Library for concurrent DNA computing. Performance proposals.

java picard concurrency dna-sequences elc

Updated Jun 9, 2017
Java

khandaud15 / RNA-Seq-Variant-Calling

Snakemake based workflow for calling Variants on RNA-Seq data in a joint calling mode

python picard rna-seq snakemake variant-calling gatk4

Updated Jul 30, 2020
Python

Nucleomics-VIB / admin-tools

sysadmin tasks made easier

picard gatk samtools filesender-cmd

Updated Feb 7, 2022
Shell

tronflow-bam-preprocessing

TRON-Bioinformatics / tronflow-bam-preprocessing

Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, realignment around indels, base quality score recalibration (BQSR) and reporting of metrics are optional to maintain flexibility for different use cases.

picard nextflow gatk tronflow

Updated Apr 7, 2022
Nextflow

phw / picard

Sponsor

MusicBrainz Picard (personal development fork)

python picard musicbrainz audio-applications tagger

Updated Apr 15, 2022
Python

jaivalis / music-archiver

picard music-hoarding

Updated Jun 7, 2020
Python

PavlidisLab / rnaseq-variant-pipeline

Pipeline for calling and analyzing variants from RNA-Seq data

picard rnaseq star luigi-workflows variant-calling gatk4 rnaseq-pipeline

Updated Feb 23, 2022
Python

TheRoddyWMS / BamToFastqPlugin

This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.

workflow picard bam-files bam fastq biobambam2 roddy

Updated Nov 18, 2020
Shell

picard-snap

metabrainz / picard-snap

Sponsor

Code for snapping MusicBrainz Picard

picard snap musicbrainz snapcraft musicbrainz-picard

Updated Mar 8, 2022
Shell

metabrainz / picard-plugin-tools

Sponsor

Tools to manage picard plugins

package picard tools plugins

Updated Aug 29, 2017
Python

dfmgr / picard

picard configs

dotfiles picard configuration-files dotfiles-installer

Updated Feb 1, 2022
Shell

FaithGriffin / CandidaPhylo

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

docker json picard docker-image samtools bwa-mem dockstore cromwell wdl-workflow candida-albicans

Updated Mar 22, 2022
wdl

jeandeaual / picard-plugins-scripts

MusicBrainz Picard plugins

python picard musicbrainz musicbrainz-picard

Updated Apr 9, 2022
Python

AnuragAnalog / Numerical-Analysis

This repo contains some of the well-known algorithms for Numerical Analysis.

c picard euler interpolation gauss-elimination numerical-analysis lu-decomposition runge-kutta descartes gauss-seidel trapezoidal cardano gauss-jacobi milne gauss-jorda inverse-using-guass-jordan simphson ramanujan birgevieta graeffe

Updated Aug 8, 2021
C

livingsilver94 / deezerart

Fetch music album covers from Deezer using MusicBrainz Picard.

plugin picard cover-art tagging-albums

Updated Dec 4, 2020
Python

gambalab / dropseq

Pipeline to process DROP-seq data

picard dropseq single-cell-rna-seq single-cell-analysis dropseqtools star-algorithm

Updated May 25, 2021
Java

rohitner / MA20102

Numerical Solution of Ordinary and Partial Differential Equation : A 3 credit course at IITKGP

picard numerical-methods runge-kutta numerical-solver forward-euler backward-euler

Updated May 29, 2018
Mathematica

SherineAwad / Downsampling

Different strategies for Downsampling: Downsampling is not just throwing a read

picard downsampling

Updated Mar 28, 2022
Python

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