SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

minions Public
Comparison between different methods to simplify sequence data

C++ 0 BSD-3-Clause 1 5 1 Updated Feb 10, 2022
seqan3 Public
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

C++ 257 60 36 16 Updated Feb 10, 2022
sharg-parser Public
THE argument parser for bio-c++ tools.

C++ 1 5 6 3 Updated Feb 10, 2022
chopper Public
A tool for partitioning a set of sequences into similar batches.

C++ 3 BSD-3-Clause 4 9 0 Updated Feb 10, 2022
raptor Public
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

C++ 26 BSD-3-Clause 9 3 1 Updated Feb 9, 2022
iGenVar Public
The official repository for the iGenVar project.

C++ 5 BSD-3-Clause 7 30 2 Updated Feb 8, 2022
mars Public
Motif-based aligned RNA searcher

C++ 0 BSD-3-Clause 2 0 0 Updated Feb 1, 2022
needle Public
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

C++ 3 BSD-3-Clause 3 5 0 Updated Jan 17, 2022
app-template Public template
This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.

CMake 1 BSD-3-Clause 8 18 0 Updated Nov 19, 2021
www.seqan.de Public

SCSS 0 MIT 7 8 2 Updated Nov 12, 2021

Pinned