Sorger Lab @ Harvard Medical School

indra Public
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Python 125 BSD-2-Clause 52 32 7 Updated Mar 9, 2022
bioagents Public
Biological reasoning agents

Python 4 BSD-2-Clause 16 7 1 Updated Feb 11, 2022
pathwaymap.indra.bio Public
pathwaymap.indra.bio website

JavaScript 0 BSD-2-Clause 1 0 7 Updated Feb 9, 2022
famplex Public
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

Python 14 28 29 2 Updated Dec 9, 2021
indra_apps Public

Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021
earm Public
Extrinsic Apoptosis Reaction Model

Python 1 17 3 1 Updated Oct 28, 2020
indra_pathway_map Public

JavaScript 0 BSD-2-Clause 5 0 0 Updated Jun 17, 2020
OMERO.forms Public
Extension to OMERO.web to enhance metadata input and provide provenance

Python 5 AGPL-3.0 3 2 1 Updated May 8, 2020
cycif Public
Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

MATLAB 8 MIT 3 0 0 Updated May 5, 2019
cheminformatics_tools Public
General tools and scripts for cheminformatics analysis and processing

Python 1 MIT 2 0 0 Updated Mar 18, 2019

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