Skip to content
@CRG-CNAG

Center for Genomic Regulation

The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, created in December 2000.

Popular repositories

  1. CalliNGS-NF Public

    GATK RNA-Seq Variant Calling in Nextflow

    Nextflow 106 46

  2. robustica Public

    customizable robust Independent Component Analysis (ICA)

    Jupyter Notebook 5 1

  3. ngs2017ws-docs Public

    NGS 2017 Post-Conference Workshop Documentation

    CSS 4 1

  4. mpistat Public

    Toolchain for collecting and reporting on inode metadata for HPC filesystems,

    Python 4 3

  5. docker-debian-perlbrew Public

    Basic Docker image for running Debian with perlbrew installed

    Dockerfile 3

  6. ngs2016ws Public

    NGS 2016 post-conference workshop documentation

    CSS 1

Repositories

  • CalliNGS-NF Public

    GATK RNA-Seq Variant Calling in Nextflow

    Nextflow 106 MPL-2.0 46 12 1 Updated Dec 14, 2022
  • robustica Public

    customizable robust Independent Component Analysis (ICA)

    Jupyter Notebook 5 BSD-3-Clause 1 0 0 Updated Oct 26, 2022
  • docker-centos-perlbrew Public

    Basic Docker image for running CentOS with perlbrew installed

    Dockerfile 0 3 1 0 Updated Sep 29, 2022
  • pipeline_roesti Public

    Pipeline to analyze bacterial RNA-seq data from RNA-seq and ribo-seq (ribosome profiling) experiments.

    Python 0 0 1 0 Updated Jul 19, 2022
  • fastqins Public

    Pipeline for transposon sequencing processing

    Python 1 GPL-3.0 0 0 0 Updated Mar 30, 2022
  • mpistat Public

    Toolchain for collecting and reporting on inode metadata for HPC filesystems,

    Python 4 GPL-3.0 3 2 2 Updated Feb 16, 2022
  • docker-debian-perlbrew Public

    Basic Docker image for running Debian with perlbrew installed

    Dockerfile 3 0 1 0 Updated Jan 10, 2022
  • killswitch Public

    Defining variants (SNPs, insertions and deletions) for a set of HiSeq samples exploring the variability in populations of M. pneumoniae transformed with a killswitch cassette

    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 2, 2021
  • Fastq2LoxDel Public

    Basic pipeline to extract lox-derived deletions

    Python 0 GPL-3.0 0 0 0 Updated Sep 14, 2020
  • anubis Public

    Python package for the analysis of tn-seq data

    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Jul 20, 2020
View all repositories

Top languages

Loading…

Most used topics

Loading…