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29 Open 216 Closed
29 Open 216 Closed
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Issues list

Alignment failed bug
#290 opened Aug 18, 2022 by cherryDAP
2
juicer version for Snakemake?
#289 opened Aug 17, 2022 by michalogit
1
Use bwa-mem2 mem to accelerate the pipeline
#288 opened Aug 10, 2022 by tinyfallen
java error while running juicer on cluster
#285 opened Jul 6, 2022 by BijalThakkar
2
How to input the eigenvertor result into the juicebox to visualization.
#284 opened Jul 2, 2022 by phil622
If I want to get hic data(hic data after mega.sh merges duplicate samples) at other resolutions , do I need to start the analysis from fq data again?
#283 opened Jun 30, 2022 by shenlinyong
Take long time to generate .hic file
#281 opened May 31, 2022 by starnight0
1
Chromosome combination error in mega.sh
#279 opened May 19, 2022 by kellyliyichen
merge: invalid option -- 'c'
#278 opened May 18, 2022 by worldxiao
mega.sh
#276 opened Apr 25, 2022 by shenlinyong
Force maximum value for APA color scale
#275 opened Apr 14, 2022 by ArielPaulson
problem with Running on already aligned files
#273 opened Mar 10, 2022 by mycecilia
2
statistics of hic contacts in inter.txt looks abnormal
#272 opened Mar 6, 2022 by JiaoLaboratory
1
[-d topDir] argument is not passed correctly to -i argument for postprocessing bug
#269 opened Feb 28, 2022 by Norbittner
1
juicer v1.6 SLURM version
#267 opened Feb 14, 2022 by Aannaw
Juicer align does not wait for splitting to finish bug
#265 opened Feb 10, 2022 by dmacguigan Juicer 2
-g argument not getting passed to juicer_postprocessing.sh bug
#264 opened Feb 8, 2022 by agilly
2
statistics not found, and cannot resume at step "afterdedup" bug
#263 opened Feb 4, 2022 by agilly
10
isVoltron should not be a default
#252 opened Jan 15, 2022 by Aannaw
2
AWK bug rounding in script bug
#241 opened Sep 25, 2021 by sa501428
2
CPU/common/cleanup.sh can unexpectedly modify INPUT fastq files bug enhancement
#239 opened Sep 9, 2021 by rsharris
3
Integer overflow when creating assembly hic file enhancement
#222 opened Apr 7, 2021 by maehler
2
No wobble dups bug
#206 opened Feb 23, 2021 by nchernia
Errorneous message in mega.sh bug
#203 opened Feb 2, 2021 by nchernia
1
Allow null queue and long_queue
#190 opened Nov 5, 2020 by rmdickson
2
ProTip! no:milestone will show everything without a milestone.