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nextstrain / nextclade

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flag to print shortenered list of dataset

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ammaraziz
ammaraziz commented Feb 21, 2022

When running nextclade dataset list the output is ~200 lines of information. The number of datasets may grow in the future and so would the output. It would be super handy to have a flag that reduces the verbosity of the list output. Possible truncated output might be:

Dataset
-------
Friendly name        : SARS-CoV-2
Safe name             : sars-cov-2
Default reference   : MN90894
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Cibiv / NextGenMap

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NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

c-plus-plus-11 opencl next-generation-sequencing short-read-mapper
  • Updated May 15, 2019
  • C++

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