#
proteomics
Here are 416 public repositories matching this topic...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 16, 2021 - Python
A collection of Galaxy-related training material
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Mar 20, 2022 - HTML
A Python API for the RCSB Protein Data Bank (PDB)
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Nov 1, 2021 - Python
Various teaching material
pdf
r
statistics
university
material
makefile
visualisation
make
data-analysis
proteomics
teaching-materials
cambridge
programming-tutorial
vectorisation
wisconsin-madison
oo-programming
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Jan 12, 2021 - HTML
A modular, python-based framework for mass spectrometry. Powered by nbdev.
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Mar 18, 2022 - Python
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
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Jan 14, 2022 - C
Base Classes and Functions for Mass Spectrometry and Proteomics
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Feb 23, 2022 - R
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
bioinformatics
chemistry
structural-biology
molecular-structures
protein-structure
artificial-intelligence
dna
protein
proteomics
docking
peptides
molecular-biology
protein-design
protein-protein-interaction
swarm-intelligence
structural-bioinformatics
protein-dna-interactions
bioinformatics-tool
glowworm-swarm-optimization
protein-docking
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Mar 1, 2022 - C
A complete toolkit for shotgun proteomics data analysis
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Mar 18, 2022 - Go
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
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Mar 18, 2022 - Java
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
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Sep 14, 2020 - Python
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
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Mar 16, 2022 - R
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
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Oct 30, 2021 - HTML
ypriverol
commented
Aug 18, 2020
The following project @qinchunyuan needs to be fixed:
The project is a cell line project but the information about the cell-line are not included.
Prize-Collecting Steiner Forests for Interactomes
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Mar 25, 2021 - Jupyter Notebook
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Feb 15, 2022 - Python
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
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Mar 18, 2022 - Python
Compare different differential abundance and expression methods
metagenomics
rnaseq
auc
proteomics
metabolomics
microbiome
false-positive-control
differential-expression
16s
otu
marker-gene-analysis
relative-abundances
compare-methods
differential-abundance-methods
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Mar 8, 2022 - R
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
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Apr 19, 2021 - Python
Deep (Transfer) Learning for Peptide Retention Time Prediction
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Sep 17, 2021 - Python
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
quality-control
drag-and-drop
heatmap
report
proteomics
metric
openms
hacktoberfest
maxquant
quality-metrics
match-between-runs
mztab
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Dec 17, 2021 - HTML
Toolbox for including enzyme constraints on a genome-scale model.
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Mar 18, 2022 - MATLAB
Feature Annotation Location Description Ontology
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Jan 21, 2020 - XSLT
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
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Mar 17, 2022 - Jupyter Notebook
Interpretation of proteomics identification results
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Mar 7, 2022 - Java
PDV: an integrative proteomics data viewer
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Oct 26, 2021 - Java
Open source Java library for computational proteomics
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Mar 7, 2022 - Java
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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Mar 17, 2022 - Python
Highly adaptable common interface for proteomics search and de novo engines
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Mar 7, 2022 - Java
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First, we would probably need to identify header files that methods that can be moved. Feel free ot add such a list to the issue here.
Maybe there is a smart way to scan header files if they contain code that could be moved to the implementation file?
e.g.a grep for lines with brackets ")" that don't contain a ";" would probably work to trim down the list of files so they can be manually chec