Here are
47 public repositories
matching this topic...
Hexrays Toolbox - Find code patterns within the Hexrays AST
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Updated
Nov 5, 2021
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Python
GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.
variant expressions, annotation, and filtering for great good.
A modular annotation tool for genomic variants
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Updated
Jan 22, 2022
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JavaScript
The Platinum Genomes Truthset
echt rapid variant annotation and filtering
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Updated
Mar 22, 2022
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Rust
simuG: a general-purpose genome simulator
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Mar 16, 2022
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Perl
A phenotype-based tool for variant prioritization in WES and WGS data
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Feb 11, 2022
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Java
What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
High-level API for storing and querying sequence variant data
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
R tools to interact with hap.py output
A Snakemake-based pipeline for gene mapping in Triticeae.
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Mar 5, 2022
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Python
[in development] Proof-of-Concept variation translation, validation, and registration service
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May 21, 2021
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Python
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Dec 9, 2021
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Shell
Reporting toolbox for happy output
Mapping complex genotypes to phenotypic subclusters
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Jan 31, 2018
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Python
Filter a VCF to discard false positive variants
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Nov 25, 2021
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Python
Variant annotation and filtration server ALAPY Genome Explorer
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May 22, 2017
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Shell
From SNP and structural variant calling to GWAS.
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Aug 25, 2017
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HTML
LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
Setup VarFish as using Docker Compose
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Mar 15, 2022
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Shell
Create a set of reference-guided multiple-aligned predicted or founder sequences from a variant call file and a reference sequence.
language-agnostic testing for inheritance models
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Apr 25, 2018
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Python
Mapping Clinically Relevant Mutations to Protein Structures
A comprehensive platform for population-scale genomic analyses
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Mar 22, 2022
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Java
Identification and classification of homopolymeric tracts from reads.
A collection of software to work with genomic variants
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Mar 21, 2022
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Python
A Prototype for Defining the Ancestral Alleles for Ones that Modify Human Phenotypes
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Jan 16, 2018
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Python
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