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48 public repositories
matching this topic...
A DSL for data-driven computational pipelines
Updated
May 12, 2022
Groovy
server for storage and management of singularity images
Updated
Apr 23, 2022
JavaScript
Updated
May 22, 2021
HTML
command line tool for working with singularity hub and singularity containers
Updated
Oct 28, 2020
Python
example singularity definition files and demos
Updated
Jun 14, 2018
Shell
Intel HPC Containers using Singularity
The Scientific Filesystem Specification and Documentation
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
Updated
Feb 25, 2019
HTML
example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers
Updated
Aug 10, 2017
Jupyter Notebook
singularity container tools for continuous integration and quality assessment
Updated
Jan 3, 2022
Python
Getting Started with Containers on HPC
Optimize workflow for binning metagenomic short reads from multiple samples
Updated
Mar 18, 2020
Nextflow
Various Singularity recipes I've used to generate containers
Singularity containers for Cylc
Updated
Dec 29, 2019
Roff
command line tool for general HPC functions using Singularity containers
web application to serve (simple) singularity images
Updated
Mar 19, 2017
Python
these are the build scripts run by the robot builders, chosen by the user for a given build
Modular application recipes for the Scientific Filesystem (SCIF)
VEP environments containerized for singularity
Updated
Aug 23, 2018
Shell
A framework for semi-automated analysis of Amplicon Sequencing data
Updated
Sep 19, 2019
Perl
Scripts and notes for singularity containers used for bioinformatics analyses
Updated
Mar 18, 2021
Perl
Updated
May 3, 2022
Shell
Nextflow + Singularity environments containerized
Updated
Aug 2, 2018
Dockerfile
Singularity Images for neurodebian
singularity image for graspit with python 3
Updated
Mar 5, 2017
Shell
Singularity containerization of a Conda-based multi-environment bash script.
Updated
Apr 17, 2021
Shell
My presentations made with compile-latex
Singularity image for (last working verison) of OpenSees
Singularity containers for running COVISE, OpenCOVER, and Vistle
Updated
Sep 2, 2020
Makefile
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This is the current build that I use on my PC tower for working with Singularity and Docker. You need WSL2 in order to run Linux-based Docker containers. This documentation will be great for anyone who has a newer version of Windows installed on their PC.
Please comment on this issue if you are interested in helping out with writing this documentation.