Montpellier BioInformatique pour le Diagnostic Clinique

Repositories

• Captain-ACHAB

  Analysis Converter for Human who might Abhor Bioinformatics. A simple and useful interface to analysis of WES data for molecular diagnosis
  Perl MIT 1 3 1 (1 issue needs help) 0 Updated Oct 30, 2020

• knotAnnotSV

  A simple script to create a customizable html file from an AnnotSV output.

  visualization annotation ranking sv
  HTML GPL-3.0 1 0 0 0 Updated Oct 27, 2020

• MobiDL

  MobidicWDL workflows

  workflow vcf bioinformatics-pipeline wdl workflow-panelcapture
  wdl GPL-3.0 1 1 0 0 Updated Oct 22, 2020

• MobiCNV

  CNV analysis based on the depth of coverage of Illumina data

  vcf-files coverage-files bioinformatics-tool tsv-files gene-panels cnv-analysis
  Python GPL-3.0 1 6 0 0 Updated Aug 25, 2020

• Achabilarity

  Achab In Singularity, a Singularity Container for Captain Achab (annotation workflow)
  MIT 0 0 0 0 Updated Jul 9, 2020

• AddDB_updater

  Script to update external cross reference database into a single file
  Perl 0 0 0 0 Updated Jul 6, 2020

• mobidicweb

  web site for mobidic group
  CSS 1 1 1 0 Updated Dec 4, 2019

• MPA

  MoBiDiC Priorization Algorithm
  Python MIT 1 7 3 0 Updated Nov 5, 2019

• autoAchab

  script to automatically launch captainAchab MobiDL WDL workflow
  Shell GPL-3.0 0 0 0 0 Updated Aug 29, 2019

• Variant-CallerWrapped

  Wrapper for Variant-Caller execution
  Python 0 1 0 0 Updated Jun 20, 2019

• Crom-wellWrapped

  Wrapper for Cromwell execution
  Shell 0 0 0 0 Updated Mar 26, 2019

• MDAPI

  RESTful API for MobiDetails - deprecated - see MDUtils repo
  Perl 0 0 0 0 Updated Dec 17, 2018

• MoLLuDiC

  CNV pipeline for MobiDL and Achab
  Shell 1 0 0 0 Updated Sep 24, 2018

• BARMEN

  BenchmARking from Mobidic for Exome sequencing at Nucleotide scale
  Shell 0 0 0 0 Updated Sep 13, 2018

• MobiBedAnnotator

  This script will annotate a BED file with refSeq NM and exons positions
  Shell GPL-3.0 0 3 0 0 Updated Aug 13, 2018

• Dev-Singularity

  Repo for singularity development and test
  Shell GPL-3.0 0 0 0 0 Updated Jun 7, 2018

• phenolyzer

  Forked from WGLab/phenolyzer

  phenotype-based prioritization of candidate genes for human diseases
  Perl 26 0 1 0 Updated May 31, 2018

• MobiDL-dev

  Developement of new pipeline from MobiDL
  wdl GPL-3.0 0 0 0 0 Updated May 28, 2018

• mpaweb

  Website for MPA
  CSS 0 1 1 0 Updated May 12, 2018

• oneliners

  Forked from stephenturner/oneliners

  Useful bash one-liners for bioinformatics.
  370 0 0 0 Updated Apr 5, 2018

• nenufaar

  Forked from beboche/nenufaar

  DNA NGS pipeline
  Shell 1 1 0 0 Updated Dec 20, 2017

• nenufaarityweb
  HTML 0 1 0 0 Updated Dec 5, 2017