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@samtools @ga4gh @bwa-mem2
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  1. minimap2 Public

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    C 1.2k 325

  2. bwa Public

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C 1.1k 507

  3. minigraph Public

    Proof-of-concept seq-to-graph mapper and graph generator

    C 263 26

  4. gfatools Public

    Tools for manipulating sequence graphs in the GFA and rGFA formats

    C 132 10

  5. A standalone and lightweight C library

    C 3.5k 491

  6. A lightweight C library for artificial neural networks

    C 602 111

604 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr Mon Wed Fri
Activity overview
Contributed to lh3/minimap2, lh3/miniwfa, lh3/minigraph and 29 other repositories

Contribution activity

April 2022

Created 2 repositories

Created an issue in smarco/BiWFA-paper that received 4 comments

Incorrect score and alignment under 2-piece penalty (specific to BiWFA)

I am using x=4, o1=4, e1=2, o2=15 and e2=1. The code to call BiWFA is here. First example – correct alignment but incorrect score TAGGGGCAGACTGACAC…

4 comments
Opened 2 other issues in 2 repositories
armintoepfer/aligner-testbed 1 closed
smarco/WFA2-lib 1 open

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