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greenelab / deep-review

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A collaboratively written review paper on deep learning, genomics, and precision medicine

review deep-learning genomics neural-networks manuscript manubot

Updated Dec 28, 2021
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easystats / report

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🎉 Automated reporting of objects in R

r apa reporting models automatic reports report rstats scientific bayesian manuscript hacktoberfest statsmodels describe automated-report-generation easystats anovas

Updated Mar 30, 2022
R

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

r apa journal reproducible-research rmarkdown psychology r-package manuscript reproducible-paper apa-guidelines

Updated Mar 31, 2022
R

manubot / rootstock

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Clone me to create your Manubot manuscript

markdown doi citation publishing manuscript manubot continuous-publication

Updated Mar 24, 2022
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massimoaria / bibliometrix

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An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

science journal citation citations scopus scientific manuscript scientometrics coupling co-occurence citation-network scholars quantitative-analysis correspondence-analysis bibliometrics co-authors science-mapping isi-web co-word-analysis bibliometric-analysis

Updated Mar 31, 2022
R

Benjamin-Lee / deep-rules

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Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
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academic / vipa

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📚 Virtual Intelligent Publishing Assistant (Vipa): A journal management and publishing software

backer sponsors publishing academic-publishing manuscript journal-management ojs assistant-personnel vipa

Updated Oct 25, 2017
PHP

greenelab / covid19-review

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Open

Possible new drug categories

1

rando2 commented Oct 6, 2020

I removed several headings that had been added early on in brainstorming for this manuscript. If anyone is looking for ideas of how to contribute, you could definitely look into how these drug development strategies are being applied to COVID-19!

Molecules Targeting the Viral Envelope
Viral Particle Vaccines
Oligonucleotide Therapies

Additionally, here is the template for adding in

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philippbayer / submission_checklist

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A checklist to help you avoid all those minor errors when submitting a scientific manuscript

coverletter manuscript

Updated Jan 13, 2022

floriankrueger / Manuscript

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AutoLayoutKit in pure Swift.

swift ios tvos cocoapods carthage uikit autolayout manuscript

Updated Apr 19, 2017
Swift

greenelab / adage

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Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

data machine-learning research paper gene-expression dataset neural-networks methodology manuscript autoencoders denoising-autoencoders pseudomonas-aeruginosa supplement

Updated May 26, 2016
Python

cboettig / nonparametric-bayes

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📓 Non-parametric Bayesian Inference for Conservation Decisions

r reproducible-research manuscript research-compendium

Updated Mar 20, 2020
TeX

manubot / try-manubot

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A repository to practice contributing to a Manubot manuscript

playground demo practice manuscript manubot try-me

Updated Mar 21, 2022
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leeper / make-example

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An example of using make for a data analysis project

reproducible-research make data-analysis manuscript

Updated May 6, 2019
R

greenelab / scihub-manuscript

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Manuscript for the Sci-Hub Coverage Study

markdown manuscript sci-hub manubot

Updated Mar 19, 2020
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XSLiuLab / tumor-immunogenicity-score

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TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

manuscript biomarker-discovery immunotherapy reproducible-analysis analysis-report tumor-immunogenicity

Updated Sep 16, 2021
R

MarioniLab / EmptyDrops2017

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Code for the empty droplet and cell detection project from the HCA Hackathon.

simulations manuscript single-cell-rna-seq human-cell-atlas

Updated Feb 26, 2019
TeX

MarioniLab / Deconvolution2016

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Code and manuscript files for Aaron and Karsten's deconvolution paper.

simulations manuscript single-cell normalization

Updated Nov 18, 2018
TeX

piero-g / markdown-workflow

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A pandoc-based layout workflow for scholarly journals. It relies on markdown, YAML and pandoc to obtain multiple publication formats

markdown yaml workflow pandoc publishing journals manuscript

Updated Mar 30, 2022
Shell

balta2ar / manuscript-dl

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Collection of scripts to download digitized manuscripts from various online libraries

python pdf library downloader download calligraphy manuscript elibrary manuscript-dl download-digitized-manuscripts

Updated Apr 21, 2019
Python

trydave / Mentor4Nepal

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#Mentor4Nepal Initiative is for recent graduates and early career professionals focusing on the enhancement of one’s skill set, support for a research project, and a collaborative publication.

students research publication nepal manuscript mentoring student-project graduates early-career-researcher