ontology

This issue serves as place to note candidate projects (via url), which might be added to the list.

Update (2022-01-29): I initially planned to use this issue as a public place to note down candidates to add them by later myself. Now, I try to ping people involved in those projects. Benefits:

• Information added is more accurate
• People get to know of this list
• Saves time for me

Update:

Currently the Jena CSV/TSV writer is used. We may have to implement our own writer here (should be sraightforward iteration over ResultSet) to implement the two requirements here for TSVs:

Inconsistencies with literals

• for TSVs, the XSD type for literals is shown, and the literal is quoted, e.g. "foo"^^xsd:string
• for CSVs, the XSD type is not shown, only the string value of the l

Chris has left a lot of Editor notes on Mondo terms when he created the ontology. The list of terms with editors notes is here.

This is a long list, but over time, we should review these comments and take appropriate action.

related to: https://github.com/monarch-initiative/mondo/issu

I would like to propose our own OBO dashboard badge which we can serve as part of an OBO dashboard run. Does anyone have any experience with creating GitHub badges? We still have not decided how compute the overall OBO score (OBOFoundry/OBO-Dashboard#26), but as a simple first pass I would like a badge for those passing the dashboard in their entirety..

Format name: Low Entropy Model Specification language

Short description: Format for complex biological models and simulations.

Parent URI(s): format_2332|format_2013

Is Format Of:

exactSynonym(s): LEMS

Specification: https://github.com/LEMS/LEMS/tree/master/Schemas/LEMS

Documentation: http://lems.github.io/LEMS/

Wikipedia:

Publication: