Evolutionary Bioinformatics (Institut pasteur)

gotree Public
Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

Go 85 GPL-2.0 12 4 0 Updated Jul 8, 2022
goalign Public
Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language.

Go 47 GPL-2.0 7 2 0 Updated Jul 8, 2022
dockerfiles Public

Dockerfile 6 7 0 0 Updated Jun 30, 2022
phylodeep Public
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

Python 5 1 0 0 Updated Jun 15, 2022
bdei Public
Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

C++ 0 LGPL-2.1 0 0 0 Updated Jun 15, 2022
pastml Public
Ancestor character reconstruction and visualisation for rooted phylogenetic trees

Python 15 GPL-3.0 1 5 0 Updated Apr 13, 2022
phylocovid Public

HTML 3 GPL-3.0 0 0 0 Updated Apr 12, 2022
treesimulator Public

Python 0 GPL-3.0 0 0 0 Updated Apr 11, 2022
pastmlweb Public
Web-app for PastML

CSS 1 GPL-3.0 0 0 0 Updated Jan 18, 2022
HIV1-CRF19_Cuba Public
Phylogenetic analyses of CRF19 spread in Cuba and worldwide

Python 0 GPL-3.0 0 0 0 Updated Dec 4, 2021

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