Here are
49 public repositories
matching this topic...
QuPath - Bioimage analysis & digital pathology
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Updated
Apr 23, 2022
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Java
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
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Apr 12, 2022
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Jupyter Notebook
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
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Sep 15, 2020
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Jupyter Notebook
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Feb 15, 2022
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Java
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
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Mar 28, 2022
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Python
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (
https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22]
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Apr 19, 2022
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Python
PyTorch implementation of several neural network models for cellular image segmentation
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Aug 27, 2019
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Jupyter Notebook
For cell segmentation and tracking.
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Feb 26, 2020
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Jupyter Notebook
Cell Detection with PyTorch.
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Apr 22, 2022
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Python
Automated identification of cell boundaries from the pathological video data
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Aug 4, 2018
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Python
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
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Sep 11, 2021
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Python
ClusterMap for multi-scale clustering analysis of spatial gene expression
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Feb 14, 2022
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Jupyter Notebook
Interactive deep learning whole-cell segmentation and thresholding using partial annotations
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Apr 21, 2022
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Jupyter Notebook
Cell Segmenter using Machine Learning
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Aug 29, 2021
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Python
Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
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Mar 15, 2017
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MATLAB
(Biological) Cell Proposal Network for Microscopy Image Analysis
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May 23, 2017
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MATLAB
Real-time, interactive exploration of 3D image stacks
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Nov 25, 2019
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Python
Child repository of Deep-learning-with-PyTorch-and-GCP
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Feb 17, 2020
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Jupyter Notebook
A small GUI application for counting cells in microscope images
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Feb 22, 2019
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Python
A python script which is used for segmenting cells from provided phase contrast images. This is a university project.
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Aug 4, 2019
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Python
Tissue Segmentation of Cancer using DeepLabV3 + Resnet101, U-Net, Inception U-Net, RefineNet
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Nov 28, 2021
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Python
Training cell segmentation models using deep learning
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May 12, 2020
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Jupyter Notebook
Software developed to analyze how polyQ inclusion bodies interact with ER membranes in situ
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Nov 2, 2019
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Python
ClusterMap for multi-scale clustering analysis of spatial gene expression
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Feb 14, 2022
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Jupyter Notebook
code used in van Raaphorst, Kjos & Veening (2017), Chromosome segregation drives division site selection in Streptococcus pneumoniae, PNAS
🔬 A U-Net based deep learning architecture for cell segmentation
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May 7, 2019
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Python
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Mar 10, 2017
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Java
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Apr 23, 2018
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Jupyter Notebook
A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
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Mar 9, 2022
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Python
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