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@chasewnelson

Chase W. Nelson 倪誠志

Scientist • Singer • Writer • bioinformatics, molecular evolution, viruses, de novo mutation, humans, evolutionary simulation, overlapping genes

Popular repositories

  1. SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl 81 37

  2. Taiwan-COVID-19-2021 Public

    Data, methods, and results of analyses tracking the May 2021 COVID-19 outbreak in Taiwan.

    R 27 3

  3. EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    Perl 9 4

  4. OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    Perl 8 2

  5. trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    Perl 8 1

  6. SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    R 3 4

Repositories

  • OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    Perl 8 GPL-3.0 2 1 0 Updated Dec 2, 2022
  • HPV16-molecular-evolution Public

    Supplementary material for study of HPV16 molecular evolution

    Python 0 GPL-3.0 0 0 0 Updated Sep 13, 2022
  • VCFgenie Public

    Script to dynamically process within-sample variants in a VCF file by implementing arbitrary filtering rules and controlling for a false-discovery rate

    Python 0 GPL-3.0 0 0 0 Updated Aug 25, 2022
  • SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl 81 GPL-3.0 37 22 0 Updated Jul 5, 2021
  • Taiwan-COVID-19-2021 Public

    Data, methods, and results of analyses tracking the May 2021 COVID-19 outbreak in Taiwan.

    R 27 GPL-3.0 3 0 0 Updated Jun 30, 2021
  • SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    R 3 GPL-3.0 4 0 0 Updated Nov 5, 2020
  • trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    Perl 8 GPL-3.0 1 0 0 Updated Sep 19, 2020
  • EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    Perl 9 GPL-3.0 4 0 0 Updated Jul 14, 2020

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