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@rnabioco

RNA Bioscience Initiative

The RNA Bioscience Initiative hosts the Informatics Fellows program to facilitate analysis of RNA sequencing data..

Pinned

  1. clustifyr Public

    Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

    R 83 15

  2. valr Public

    Genome Interval Arithmetic in R

    R 70 22

  3. djvdj Public

    An R package to analyze single-cell V(D)J data

    R 10 2

  4. ggtrace Public

    ggplot2 geoms to outline groups of data points

    R 5

  5. someta Public

    Inclusion of processed cell metadata improves single cell sequencing analysis reproducibility and accessibility

    R 7 3

  6. Molecular tracking devices quantify in vivo antigen distribution and archiving

    HTML 2

Repositories

  • djvdj Public

    An R package to analyze single-cell V(D)J data

    R 10 2 14 1 Updated May 26, 2022
  • status Public

    Current status of rnabioco public repositories (updated weekly)

    R 0 1 1 0 Updated May 22, 2022
  • rhumba Public

    a collection of snakemake pipelines

    C 2 2 1 0 Updated Apr 29, 2022
  • clustifyr Public

    Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

    R 83 MIT 15 10 0 Updated Apr 28, 2022
  • squirrelbox Public

    Shiny app to browse hibernating ground squirrel brain tissue RNA-seq data, new genome assembly and transcriptome annotation.

    R 4 MIT 2 3 0 Updated Apr 13, 2022
  • scraps Public

    Single-cell RNA Processing Software

    HTML 5 MIT 0 11 0 Updated Mar 15, 2022
  • valr Public

    Genome Interval Arithmetic in R

    R 70 22 4 0 Updated Mar 15, 2022
  • scrapR Public

    R package for importing and processing scraps reference and output

    R 0 MIT 0 2 0 Updated Mar 7, 2022
  • scbp Public

    utility boilerplate single cell functions

    R 3 1 1 0 Updated Feb 25, 2022
  • R 0 0 0 0 Updated Feb 24, 2022

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