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43 public repositories
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As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Updated
May 7, 2020
Jupyter Notebook
Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.
Kourami: Graph-guided assembly for HLA alleles
Updated
May 21, 2019
Java
For IVCT Framework Developers. Core System for the IVCT (Integration, Verification and Certification Tool) for HLA Federates
R package – HLA Genotype Imputation with Attribute Bagging (development, unstable version)
Fork of the Polysolver project
Updated
Nov 21, 2019
Perl
RACoN - RTI abstraction component for MS.NET (RACoN)
Allele Calling Tool (ACT)
Updated
Oct 21, 2019
Python
CERTI is an Open Source HLA RTI. HLA (High-Level Architecture) is a general purpose architecture for distributed computer simulation systems. In HLA systems, the RTI (RunTime Infrastructure) manages data exchange between simulations. CERTI supports HLA 1.3 specifications (C++ and Java) and partial IEEE 1516-v2000 and IEEE 1516-v2010 (C++) . CERTI is open source software (GPL, libraries are LGPL).
By IEEE 1516 Standard, To design and lmplement one distributed system for simulator purpose.
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
IDE for the HLA language, written in HLA. Self compiles using HIDE
Python package for doing fast and accurate sequence annotation
Updated
Nov 12, 2019
Python
A collection of modules to process and analyze IMGT-HLA sequences.
Updated
Jan 10, 2020
Parrot
About the HLA containers project
HLA typing for Sanger Based Test
Use nextflow to run BAM files through OptiType
Precision HLA typing from next-generation sequencing data
Updated
Sep 25, 2018
Nextflow
The repository contains all the code for the paper amino acid encoding using deep learning application
Updated
Mar 9, 2020
Python
The IMGT/HLA sequence data persisted in a BioSQL database
Updated
Oct 6, 2018
Python
CSintolSDK is the C++SDK for link and inveraction to SintolRTOSNode
This is a Sample project to be used with coreDS Unreal and the Unreal Engine 4.
An HLA alleles aggregator.
Docker image for arcasHLA software
Updated
Jan 27, 2020
Dockerfile
University project for HLA real time simulation of a bank
Updated
Jan 31, 2019
Java
it's the sdk for python with linking rtosnode
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Currently, it is not documented anywhere, which version of the HLA reference is used. EBI releases several versions during the year.
Also, in terms of reproducibility, it would be a nice feature, if the pipeline could be run given a user-defined release version of the HLA reference.