Pinello Lab

Massachusetts General Hospital/ Harvard Medical School

haystack_bio Public
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

HTML 39 AGPL-3.0 10 4 1 Updated Apr 8, 2022
CRISPResso2 Public
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Python 131 67 23 3 Updated Apr 8, 2022
CRISPRme Public

Python 0 0 2 0 Updated Apr 7, 2022
AmpUMI Public
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)

Python 30 8 1 0 Updated Apr 6, 2022
CRISPRitz Public
Tool package to perform in-silico CRISPR analysis and assessment

Python 10 6 4 0 Updated Mar 29, 2022
singlecellvr Public

HTML 9 3 2 3 Updated Mar 11, 2022
GRAFIMO Public
GRAph-based Finding of Individual Motif Occurrences

Python 22 MIT 2 1 0 Updated Feb 28, 2022
simba Public
SIMBA: SIngle-cell eMBedding Along with features

Python 20 BSD-3-Clause 3 0 0 Updated Jan 4, 2022
STREAM Public
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Jupyter Notebook 134 AGPL-3.0 40 44 0 Updated Dec 18, 2021
simba_pbg Public
A customized PyTorch-BigGraph (PBG) package for "simba", modified from https://github.com/facebookresearch/PyTorch-BigGraph

Python 0 1 0 0 Updated Oct 18, 2021

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