-
Updated
Mar 7, 2022 - Python
#
sequencing
Here are 328 public repositories matching this topic...
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
-
Updated
May 11, 2022 - Python
Analysis of single cell RNA-seq data course
-
Updated
Apr 11, 2022 - TeX
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
-
Updated
May 2, 2022 - Nim
Simple & Efficient data access for Scala and Scala.js
-
Updated
May 11, 2022 - Scala
A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.
-
Updated
Apr 1, 2022 - Python
A repository for setting up a RNAseq workflow
-
Updated
Apr 10, 2017 - R
yannickwurm
commented
Dec 19, 2021
It isn't obvious to users that a search result URL is stable (until deleted).
To make this more obvious, we should add an explicit
Share results section, with a "Copy URL to clipboard" text that does what it says
Analysis Pipeline for Single Cell ATAC-seq
machine-learning-algorithms
sequencing
epigenetics
bioinformatics-pipeline
single-cell-analysis
single-cell-atac-seq
-
Updated
Mar 7, 2022 - R
Rapid large-scale prokaryote pan genome analysis
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
-
Updated
Apr 21, 2022 - Perl
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
-
Updated
May 10, 2022 - Python
Finds SNP sites from a multi-FASTA alignment file
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
-
Updated
Dec 16, 2020 - C
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
-
Updated
Apr 12, 2022 - Java
A tool to circularize genome assemblies
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
-
Updated
Nov 2, 2021 - Python
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
language
performance
osc
creative-coding
sequencing
live-coding
livecoding
visuals
mercury
algorithmic-composition
sounds
mercury-environment
human-readable-language
-
Updated
May 6, 2022 - Max
UGENE is free open-source cross-platform bioinformatics software
-
Updated
May 12, 2022 - C++
victorlin
commented
Apr 28, 2022
Example: https://docs.nextstrain.org/projects/nextclade/en/stable/user/algorithm/07-quality-control.html
gets rendered as:
<img alt="Identification of private mutations" src="/docs/user/assets/algo_private-muts.png">and the absolute
t:bug
Type: bug, error, something isn't working
good first issue
Good for newcomers
help wanted
Extra attention is needed
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
rna-seq
sequencing
transcriptome
transcriptomics
single-cell
marker-genes
seurat
cluster-annotation
cell-markers
-
Updated
Apr 27, 2022 - R
Antimicrobial Resistance Identification By Assembly
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
-
Updated
Jan 31, 2022 - Python
Genomics Extension for SQLite
-
Updated
Mar 28, 2022 - C++
-
Updated
Oct 13, 2021 - Python
BAM Statistics, Feature Counting and Annotation
alfred
quality
quality-control
sequencing
read-counts
insert-size
coverage-distribution
alignment-metrics
feature-counting
-
Updated
May 4, 2022 - C++
Accurate and flexible loops calling tool for 3D genomic data.
python
bioinformatics
algorithm
pipeline
tool
clustering
ngs
sequencing
example-data
hi-c
dbscan
3d-genome
chia-pet
chromatin-interaction
stripes
hichip
chromatin-loops
chromatin-stripes
loops-calling
trac-looping
-
Updated
Feb 1, 2022 - Python
Polyrhythmic Sequencer library for Web Audio API.
-
Updated
Jan 27, 2022 - JavaScript
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
bioinformatics
duplex
ngs
sequencing
consensus
duplication
deduplication
somatic
deep-sequencing
sequencing-error
sequencing-noise
duplex-sequencing
-
Updated
Oct 29, 2021 - C++
Improve this page
Add a description, image, and links to the sequencing topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the sequencing topic, visit your repo's landing page and select "manage topics."
We need some good graphics for the main sampler screen. This is where you can do rudimentary editing of the samples that are played in the sequencer.
There are two screens. The main screen with the controls: