#
antibody
Here are 56 public repositories matching this topic...
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
java
linux
bioinformatics
universal
profit
immunology
t-cell
antibody
t-cell-receptor
rep-seq
shugay-mikhail
accurate-analysis
dmitriy
paragraphs
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Updated
Sep 18, 2021 - Java
Post-analysis of immune repertoire sequencing data
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Updated
Mar 9, 2022 - Groovy
Tools and databases for analyzing HLA and VDJ genes.
bioinformatics
awesome-list
immunology
antibody
t-cell-receptor
hla-database
hla-typing
b-cell-receptor
-
Updated
Jun 1, 2022
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
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Updated
Mar 2, 2018 - Groovy
A RepSeq processing swiss-knife
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Updated
Mar 11, 2022 - Groovy
bioinformatics
t-cell
antibody
rep-seq
scrna-seq-data
immunoinformatics
computational-immunology
immune-repertoire-data
covid-19
sars-cov-2
covid-19-data
single-cell-data
airr-analysis
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Updated
May 21, 2020
Python package for analysis of antibody heavy and light chains
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Updated
Aug 16, 2020 - Python
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
machine-learning
bioinformatics
deep-learning
computational-biology
antibody
haddock
covid-19
sars-cov-2
alphafold2
rosettafold
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Updated
Mar 1, 2022 - Jupyter Notebook
0-vortex
commented
Jun 28, 2021
Having early access to GitHub Codespaces is really nice but the default containers could use some docker layer optimisation and push to the existing 0vortex/dotfiles tag as latest or codespaces.
Some additional configuration is required to make GitHub pull this ready-to-go image in every code space and some dotbot codification to make it potenti
enhancement
New feature or request
help wanted
Extra attention is needed
good first issue
Good for newcomers
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
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Updated
Apr 26, 2021 - Python
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
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Updated
Mar 13, 2021 - R
Substitution Profiles Using Related Families
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Updated
Aug 2, 2018 - Python
Sapiens is a human antibody language model based on BERT.
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Updated
Mar 29, 2022 - Jupyter Notebook
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
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Updated
Oct 29, 2021 - R
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
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Updated
May 5, 2020 - Jupyter Notebook
config
macos
dotfiles
zsh
tree
configuration-management
cheatsheet
antibody
antigen
dotfiles-install
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Updated
Mar 22, 2022 - Shell
R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.
r
rstudio
sequencing
barcode
dna
antibody
umi
dna-sequences
fastq-files
rpackage
umi-count
umi-sequence
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Updated
Jun 30, 2021 - R
My macOS dev setup: zsh configuration and a collection of bash scripts.
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Updated
Aug 16, 2021 - Shell
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It would be nice to be able to navigate between all results without having to go back to the result table page