Aiden Lab

The Center for Genome Architecture

Juicebox Public
Visualization and analysis software for Hi-C data -

Java 160 MIT 49 221 (2 issues need help) 0 Updated May 10, 2022
HiCTools Public

Java 1 MIT 0 0 0 Updated May 1, 2022
juicer Public
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Shell 270 MIT 157 21 2 Updated Apr 29, 2022
mmba Public
Moshe's matrix balancing algorithm

C 0 0 1 (1 issue needs help) 0 Updated Apr 16, 2022
straw Public
Extract data quickly from Juicebox via straw

C++ 33 MIT 32 17 0 Updated Apr 16, 2022
hic-format Public

1 0 0 0 Updated Mar 10, 2022
JuiceboxGUI Public

Java 0 MIT 0 0 0 Updated Feb 26, 2022
3d-dna Public
3D de novo assembly (3D DNA) pipeline

Shell 125 MIT 42 35 1 Updated Feb 10, 2022
pyStraw Public
Python only flavor of straw for streaming .hic data [Deprecated]

Jupyter Notebook 0 MIT 0 0 0 Updated Feb 4, 2022
POLAR-BEAR Public
Pipeline for POLAR: viral diagnostic for SARS-CoV-2

Shell 7 MIT 1 1 0 Updated Jan 24, 2022

Pinned