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  1. atropos Public

    An NGS read trimming tool that is specific, sensitive, and speedy. (production)

    Python 113 14

  2. seqio Public

    A library for high-performance reading and writing of common NGS formats. (pre-alpha)

    Python 3

  3. clasp Public

    Cell Line Authentication by SNP Profiling (CLASP). (production)

    R 1

  4. xphyle Public

    Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compression format. (production)

    Python 18 3

  5. papers2 Public

    Python library for interacting with a Papers2 database, plus scripts to export into various formats. (beta)

    Python 5 4

  6. Open courseware for workshops in applied bioinformatics

    HTML 9 5

288 contributions in the last year

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Mon Wed Fri

Contribution activity

December 2022

Created 4 repositories
Opened 2 pull requests in 1 repository
Reviewed 2 pull requests in 1 repository

Created an issue in python-cachier/cachier that received 5 comments

Please document explicitly that cachier does not work for methods

Given that pickle files are named ".{module}.{func}", two methods with the same name in different classes will both try to save to the same file. A…

5 comments

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