plink

A comprehensive tutorial about GWAS and PRS

PLINK reader for Python.

Fixes and new release. PuTTY Tunnel Manager allows you to easily open tunnels, that are defined in a PuTTY session, from the system tray. You can also move the tunnels from PuTTY to PuTTY Tunnel Manager. This allows you to use PuTTY just for SSH shell sessions (without opening tunnels), and use PuTTY Tunnel Manager just for tunneling.

Compressed storage for SNP data

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

A matrix-like wrapper around PLINK .bed files

Setup and starter script for the PLINK R plugin.

GWAS

Toolkit for the efficient construction and analysis of polygenic risk scores in R.

Automate repetitive Putty/SSH tasks, a free alternative to Ansible

Windows frontend for digging SSH tunnels and creating socks proxies

In Silico Bioinformatics Toolbox

Script package to automate waking and playing your PS3 from your (remote) Windows PC

Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).

Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink

The DSL for Dotfiles

A docker wrapper for plink

DNA Imputation tool for Generis.

plinker is a R package to interface PLINK over PLINK BED files.

PlinkProxy for PortableApps.com

The IKMB GWAS Association Testing Pipeline

In silico research group's bioinformatics toolbox for network and machine learning analysis

Python library to work with PLINK files.

A python script to remove duplicate snps from plink files and recode the resultant files into plink binaries free of duplicate snps

The CGR GWAS QC processing workflow.

This is a short Plink tutorial I developed as a markdown for my students in the Research Mentorship Program at UCSB

Runtime files for plink