neherlab

Popular repositories

1. covid19_scenarios Public

   Models of COVID-19 outbreak trajectories and hospital demand

   JavaScript 1.4k 371

2. treetime Public

   Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

   Jupyter Notebook 144 50

3. pan-genome-analysis Public

   Processing pipeline for pan-genome visulization and exploration

   Python 104 31

4. pan-genome-visualization Public

   Forked from wdingx/pan-genome-visualization

   Visualization of the pan-genome output by panX

   JavaScript 51 11

5. covid19_scenarios_data Public archive

   Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

   Python 44 37

6. pangraph Public

   A bioinformatic toolkit to align genome assemblies into pangenome graphs

   Julia 26 2