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37 Open 79 Closed
37 Open 79 Closed
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Feature request: Filter mapped reads by minimum match fraction enhancement
#139 opened Oct 12, 2020 by luispedro
Using collect on countables from mapstats gives a funny result
#138 opened Sep 18, 2020 by mettejoe
Better debug message for files missing for collect() better error message enhancement
#136 opened Apr 23, 2020 by unode
Introduce computation stages - validation, download, prepare, ... enhancement performance
#135 opened Mar 4, 2020 by unode
1
Error while generating reports for mOTUs. (fails integration tests)
#134 opened Feb 28, 2020 by nairsajjal
1
No HTML report is generated when using the parallel module bug help wanted
#133 opened Feb 27, 2020 by unode
2
Add read_length() to ShortRead type enhancement
#126 opened Dec 5, 2019 by unode
2
Broken pipe with samtools view upon conversion from minimap2 SAM -> BAM
#124 opened Oct 15, 2019 by unode
1
ngless complains about igc version
#123 opened Sep 26, 2019 by ycl6
Update documentation: supported return types for modules
#119 opened Aug 20, 2019 by mkuhn
2
Inconsistent use of `local import` bug
#117 opened Aug 12, 2019 by unode
1
Update documentation for motus profiling to reflect motus2 documentation
#114 opened Jul 17, 2019 by theavanrossum
3
Requesting qcstats when none exist fails better error message bug
#113 opened Jul 4, 2019 by unode
Allow collect()'ing when all processing is complete enhancement
#112 opened Jun 19, 2019 by unode
2
Reference data includes bwa indices under incorrect name
#108 opened May 28, 2019 by unode
2
ngless --install-reference-data defaults to script version 0.0
#107 opened May 21, 2019 by unode
Add ability to strip sequences/qualities from SAM/BAM files good first issue help wanted
#102 opened Feb 28, 2019 by unode
7
Implement API to cleanup unnecessary files enhancement good first issue
#99 opened Feb 7, 2019 by unode
API for querying available versions of modules
#87 opened Oct 15, 2018 by unode
It should be possible to have methods with same name on different types
#81 opened Sep 19, 2018 by unode
mapstats() should error with position sorted sam/bam files
#80 opened Sep 19, 2018 by unode
Ability to cast int/double <-> string
#78 opened Sep 3, 2018 by unode
1
Improvements to qcstats (fastq, mapping) formats - explicit behavior? enhancement help wanted question
#75 opened Jun 26, 2018 by unode
2
Decouple stats machinery from HTML reporting enhancement
#74 opened Jun 26, 2018 by unode
Include file grouping information in fqstats enhancement
#73 opened Jun 19, 2018 by unode
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